Variant report

Variant	rs16930577
Chromosome Location	chr9:13621820-13621821
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 40 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:35)

rs_ID	r²[population]
rs10491761	0.92[EUR][1000 genomes]
rs12000174	1.00[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs12002484	1.00[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs16923099	0.84[EUR][1000 genomes]
rs16930626	0.92[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs16930646	0.85[ASN][1000 genomes]
rs16930665	0.92[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs16930668	0.92[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs16930675	0.84[ASN][1000 genomes]
rs16930694	0.92[EUR][1000 genomes]
rs16930712	0.84[EUR][1000 genomes]
rs60961071	0.92[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs61472956	0.84[EUR][1000 genomes]
rs7032707	0.92[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs7032959	0.92[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs73647695	1.00[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs73647696	1.00[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs73647697	1.00[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs73650811	0.84[EUR][1000 genomes]
rs8192959	0.92[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs8192961	0.92[EUR][1000 genomes]
rs8192966	0.92[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs8192967	0.92[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs8192968	0.92[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs8192969	0.92[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs8192972	0.92[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs8192974	0.92[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs8192976	0.92[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs8192978	0.92[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs8192979	0.92[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs8192980	0.92[EUR][1000 genomes]
rs8192983	0.92[EUR][1000 genomes]
rs8192985	0.84[EUR][1000 genomes]
rs8192992	0.84[EUR][1000 genomes]
rs8192997	0.84[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1017792	chr9:13529680-13654107	Enhancers Flanking Active TSS Bivalent/Poised TSS Weak transcription Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	diseases
2	nsv1023684	chr9:13529680-13744602	Enhancers Flanking Active TSS Weak transcription Bivalent/Poised TSS Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats Genic enhancers	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
3	nsv540067	chr9:13529680-13744602	Flanking Active TSS Enhancers Weak transcription ZNF genes & repeats Active TSS Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Genic enhancers	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
4	nsv1026786	chr9:13530105-13627116	Flanking Active TSS Enhancers Weak transcription Active TSS Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	diseases
5	nsv892587	chr9:13601074-13732363	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Genic enhancers Bivalent Enhancer	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:9 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:13616600-13622200	Weak transcription	Aorta	Aorta
2	chr9:13619400-13622600	Enhancers	Fetal Lung	lung
3	chr9:13620600-13622400	Enhancers	Fetal Muscle Leg	muscle
4	chr9:13620600-13622400	Enhancers	Skeletal Muscle Male	skeletal muscle
5	chr9:13621600-13622400	Enhancers	Skeletal Muscle Female	skeletal muscle
6	chr9:13621600-13622600	Enhancers	Stomach Smooth Muscle	stomach
7	chr9:13621800-13622000	Enhancers	Psoas Muscle	Psoas
8	chr9:13621800-13622400	Enhancers	Adipose Nuclei	Adipose
9	chr9:13621800-13622400	Enhancers	Colon Smooth Muscle	Colon

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