Variant report

Variant	rs16933968
Chromosome Location	chr9:16023782-16023783
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 32 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:27)

rs_ID	r²[population]
rs10962194	0.86[CHB][hapmap];0.88[JPT][hapmap]
rs12683980	0.88[CHB][hapmap];0.90[JPT][hapmap];1.00[EUR][1000 genomes]
rs12684042	1.00[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs12684785	0.89[JPT][hapmap];1.00[EUR][1000 genomes]
rs12684808	0.86[CHB][hapmap];0.89[JPT][hapmap]
rs12684919	1.00[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs12685476	0.86[CHB][hapmap];0.89[JPT][hapmap];1.00[EUR][1000 genomes]
rs12686591	0.88[CHB][hapmap];0.90[JPT][hapmap];1.00[EUR][1000 genomes]
rs1328266	0.84[ASN][1000 genomes]
rs1328267	1.00[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs1328268	1.00[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs1536685	1.00[EUR][1000 genomes]
rs16933805	0.86[CHB][hapmap];1.00[EUR][1000 genomes]
rs16933814	1.00[EUR][1000 genomes]
rs16933967	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16933971	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16933973	1.00[AFR][1000 genomes];0.90[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs16933974	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2026660	1.00[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs59923163	1.00[EUR][1000 genomes]
rs60354508	1.00[EUR][1000 genomes]
rs7040928	1.00[EUR][1000 genomes]
rs7044984	1.00[EUR][1000 genomes]
rs73411567	1.00[EUR][1000 genomes]
rs73411570	1.00[EUR][1000 genomes]
rs73411572	1.00[EUR][1000 genomes]
rs7866472	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv892625	chr9:15326251-16064850	Enhancers Active TSS Weak transcription Strong transcription Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	35 gene(s)	inside rSNPs	diseases
2	nsv892637	chr9:15926508-16060746	Enhancers Strong transcription Weak transcription Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
3	nsv949463	chr9:15970668-16377360	Enhancers ZNF genes & repeats Flanking Active TSS Weak transcription Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh Strong transcription Bivalent/Poised TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
4	nsv831521	chr9:15974174-16106565	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Strong transcription Bivalent/Poised TSS Active TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
5	nsv1025555	chr9:16022186-16064158	Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Active TSS Strong transcription Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:18 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:16018200-16028600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
2	chr9:16019800-16024400	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
3	chr9:16022400-16024200	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
4	chr9:16022400-16024800	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
5	chr9:16022600-16031800	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
6	chr9:16022800-16024200	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
7	chr9:16022800-16024600	Enhancers	NH-A	brain
8	chr9:16022800-16024800	Enhancers	NHDF-Ad	bronchial
9	chr9:16022800-16024800	Enhancers	Osteobl	bone
10	chr9:16023000-16024000	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
11	chr9:16023000-16026200	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
12	chr9:16023400-16023800	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
13	chr9:16023400-16024200	Enhancers	HMEC	breast
14	chr9:16023400-16024200	Enhancers	HSMM	muscle
15	chr9:16023600-16023800	Enhancers	Muscle Satellite Cultured Cells	--
16	chr9:16023600-16024200	Enhancers	NHLF	lung
17	chr9:16023600-16024400	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
18	chr9:16023600-16040600	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin

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