Variant report

Variant	rs7040928
Chromosome Location	chr9:15946587-15946588
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 51 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:46)

rs_ID	r²[population]
rs10962193	0.93[AMR][1000 genomes];0.88[ASN][1000 genomes]
rs10962194	0.93[AMR][1000 genomes];0.88[ASN][1000 genomes]
rs11999303	0.93[AMR][1000 genomes];0.88[ASN][1000 genomes]
rs12005062	0.93[AMR][1000 genomes];0.88[ASN][1000 genomes]
rs12005485	0.93[AMR][1000 genomes];0.88[ASN][1000 genomes]
rs12005521	0.93[AMR][1000 genomes];0.88[ASN][1000 genomes]
rs12683980	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs12684042	1.00[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs12684785	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs12684808	0.85[AMR][1000 genomes];0.95[ASN][1000 genomes]
rs12684919	1.00[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs12685476	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs12685963	0.93[AMR][1000 genomes];0.88[ASN][1000 genomes]
rs12686591	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs1328266	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes];0.89[ASN][1000 genomes]
rs1328267	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs1328268	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs1536685	0.81[AMR][1000 genomes];1.00[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs16933805	1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs16933814	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs16933967	1.00[EUR][1000 genomes]
rs16933968	1.00[EUR][1000 genomes]
rs16933971	1.00[EUR][1000 genomes]
rs16933974	1.00[EUR][1000 genomes]
rs2026660	0.80[AFR][1000 genomes];1.00[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs2066291	0.81[AFR][1000 genomes]
rs2382550	0.82[AFR][1000 genomes]
rs59923163	0.81[AMR][1000 genomes];1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs60354508	0.81[AMR][1000 genomes];1.00[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs7026090	0.93[AMR][1000 genomes];0.88[ASN][1000 genomes]
rs7029375	0.93[AMR][1000 genomes];0.88[ASN][1000 genomes]
rs7029410	0.93[AMR][1000 genomes];0.88[ASN][1000 genomes]
rs7040071	0.93[AMR][1000 genomes];0.88[ASN][1000 genomes]
rs7040549	0.93[AMR][1000 genomes];0.88[ASN][1000 genomes]
rs7040580	0.93[AMR][1000 genomes];0.88[ASN][1000 genomes]
rs7044984	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs7048479	0.84[AFR][1000 genomes]
rs73411567	0.81[AMR][1000 genomes];1.00[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs73411570	0.81[AMR][1000 genomes];1.00[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs73411572	0.81[AMR][1000 genomes];1.00[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs7856304	0.84[AFR][1000 genomes]
rs7861533	1.00[AMR][1000 genomes];0.85[ASN][1000 genomes]
rs7866472	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs7866699	1.00[AMR][1000 genomes];0.85[ASN][1000 genomes]
rs7867018	1.00[AMR][1000 genomes];0.85[ASN][1000 genomes]
rs7867521	0.82[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv892625	chr9:15326251-16064850	Enhancers Active TSS Weak transcription Strong transcription Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	35 gene(s)	inside rSNPs	diseases
2	esv2753625	chr9:15914055-15980320	ZNF genes & repeats Weak transcription Enhancers Strong transcription Flanking Active TSS Genic enhancers Bivalent Enhancer	lncRNA	n/a	inside rSNPs	diseases
3	nsv892637	chr9:15926508-16060746	Enhancers Strong transcription Weak transcription Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
4	esv3483970	chr9:15944147-15948125	Weak transcription ZNF genes & repeats	n/a	n/a	inside rSNPs	diseases
5	esv3483971	chr9:15944147-15948125	Weak transcription ZNF genes & repeats	n/a	n/a	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:15933200-15951400	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
2	chr9:15936800-15946800	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
3	chr9:15943800-15954800	Weak transcription	Fetal Lung	lung

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