Variant report

Variant	rs12685476
Chromosome Location	chr9:15962335-15962336
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 59 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:56)

rs_ID	r²[population]
rs10962193	0.86[CHB][hapmap];0.89[JPT][hapmap];0.93[AMR][1000 genomes]
rs10962194	0.85[CHB][hapmap];0.86[JPT][hapmap];0.93[AMR][1000 genomes]
rs11999303	0.86[CHB][hapmap];0.89[JPT][hapmap];0.93[AMR][1000 genomes]
rs12000772	0.86[CHB][hapmap]
rs12005062	0.86[CHB][hapmap];0.89[JPT][hapmap];0.93[AMR][1000 genomes]
rs12005485	0.93[AMR][1000 genomes]
rs12005521	0.93[AMR][1000 genomes]
rs12682932	0.86[CHB][hapmap];0.89[YRI][hapmap]
rs12683980	1.00[CHB][hapmap];1.00[JPT][hapmap];0.89[YRI][hapmap];0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs12684042	1.00[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs12684785	1.00[ASW][hapmap];0.94[CHD][hapmap];1.00[JPT][hapmap];0.90[LWK][hapmap];1.00[MEX][hapmap];0.84[MKK][hapmap];1.00[TSI][hapmap];0.83[YRI][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12684808	1.00[ASW][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];0.84[MKK][hapmap];1.00[TSI][hapmap];0.85[AMR][1000 genomes];0.83[ASN][1000 genomes]
rs12684919	1.00[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs12685963	0.93[AMR][1000 genomes]
rs12686591	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1328266	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes];0.91[ASN][1000 genomes]
rs1328267	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs1328268	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs1536685	0.89[JPT][hapmap];0.81[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1578558	0.86[CHB][hapmap]
rs16933626	0.88[YRI][hapmap]
rs16933805	1.00[CHB][hapmap];0.89[JPT][hapmap];1.00[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs16933814	0.89[JPT][hapmap];0.90[YRI][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs16933967	1.00[EUR][1000 genomes]
rs16933968	1.00[EUR][1000 genomes]
rs16933971	1.00[EUR][1000 genomes]
rs16933974	1.00[EUR][1000 genomes]
rs2026660	0.83[AFR][1000 genomes];1.00[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs2066291	0.86[CHB][hapmap];0.90[YRI][hapmap]
rs2382550	0.85[AFR][1000 genomes]
rs59923163	0.81[AMR][1000 genomes];1.00[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs60354508	0.81[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7026090	0.86[CHB][hapmap];0.93[AMR][1000 genomes]
rs7029375	0.86[CHB][hapmap];0.93[AMR][1000 genomes]
rs7029410	0.86[CHB][hapmap];0.93[AMR][1000 genomes]
rs7039881	0.86[CHB][hapmap]
rs7040071	0.86[CHB][hapmap];1.00[CHD][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];0.93[AMR][1000 genomes]
rs7040549	0.93[AMR][1000 genomes]
rs7040580	0.86[CHB][hapmap];0.93[AMR][1000 genomes]
rs7040928	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs7044984	0.89[JPT][hapmap];0.90[YRI][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73411567	0.81[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs73411570	0.81[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs73411572	0.81[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7388793	0.86[CHB][hapmap]
rs770194	0.86[CHB][hapmap]
rs770198	0.86[CHB][hapmap]
rs770199	0.86[CHB][hapmap]
rs770200	0.86[CHB][hapmap]
rs770201	0.86[CHB][hapmap]
rs770202	0.86[CHB][hapmap]
rs7852250	0.86[CHB][hapmap]
rs7861533	1.00[AMR][1000 genomes]
rs7866472	0.89[JPT][hapmap];0.90[YRI][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7866699	0.86[CHB][hapmap];0.89[JPT][hapmap];0.90[YRI][hapmap];1.00[AMR][1000 genomes]
rs7867018	0.86[CHB][hapmap];0.89[YRI][hapmap];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv892625	chr9:15326251-16064850	Enhancers Active TSS Weak transcription Strong transcription Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	35 gene(s)	inside rSNPs	diseases
2	esv2753625	chr9:15914055-15980320	ZNF genes & repeats Weak transcription Enhancers Strong transcription Flanking Active TSS Genic enhancers Bivalent Enhancer	lncRNA	n/a	inside rSNPs	diseases
3	nsv892637	chr9:15926508-16060746	Enhancers Strong transcription Weak transcription Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:15952600-15987600	Weak transcription	Primary hematopoietic stem cells	blood
2	chr9:15955800-15972600	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
3	chr9:15958400-15972200	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--

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