Variant report

Variant	rs16933971
Chromosome Location	chr9:16028165-16028166
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 55 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:50)

rs_ID	r²[population]
rs10962193	0.86[CHB][hapmap]
rs10962194	0.85[CHB][hapmap];0.86[JPT][hapmap]
rs11999303	0.86[CHB][hapmap]
rs12000772	0.86[CHB][hapmap]
rs12005062	0.86[CHB][hapmap]
rs12682932	0.86[CHB][hapmap]
rs12683980	1.00[CHB][hapmap];0.89[JPT][hapmap];1.00[EUR][1000 genomes]
rs12684042	1.00[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs12684785	0.89[JPT][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];1.00[EUR][1000 genomes]
rs12684808	1.00[CHB][hapmap];0.81[CHD][hapmap];0.89[JPT][hapmap];1.00[TSI][hapmap]
rs12684919	1.00[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs12685476	1.00[CHB][hapmap];0.83[CHD][hapmap];0.89[JPT][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];1.00[EUR][1000 genomes]
rs12686591	1.00[CHB][hapmap];0.89[JPT][hapmap];1.00[EUR][1000 genomes]
rs1328266	0.84[ASN][1000 genomes]
rs1328267	1.00[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs1328268	1.00[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs1536685	1.00[EUR][1000 genomes]
rs1578558	0.86[CHB][hapmap]
rs16933805	1.00[CHB][hapmap];1.00[EUR][1000 genomes]
rs16933814	1.00[EUR][1000 genomes]
rs16933967	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16933968	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16933973	1.00[AFR][1000 genomes];0.90[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs16933974	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2026660	1.00[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs2066291	0.86[CHB][hapmap]
rs59923163	1.00[EUR][1000 genomes]
rs60354508	1.00[EUR][1000 genomes]
rs7026090	0.86[CHB][hapmap]
rs7029375	0.86[CHB][hapmap]
rs7029410	0.86[CHB][hapmap]
rs7039881	0.86[CHB][hapmap]
rs7040071	0.86[CHB][hapmap];0.83[CHD][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap]
rs7040580	0.86[CHB][hapmap]
rs7040928	1.00[EUR][1000 genomes]
rs7044984	1.00[EUR][1000 genomes]
rs73411567	1.00[EUR][1000 genomes]
rs73411570	1.00[EUR][1000 genomes]
rs73411572	1.00[EUR][1000 genomes]
rs7388793	0.86[CHB][hapmap]
rs770194	0.86[CHB][hapmap]
rs770198	0.86[CHB][hapmap]
rs770199	0.86[CHB][hapmap]
rs770200	0.86[CHB][hapmap]
rs770201	0.86[CHB][hapmap]
rs770202	0.86[CHB][hapmap]
rs7852250	0.86[CHB][hapmap]
rs7866472	1.00[EUR][1000 genomes]
rs7866699	0.86[CHB][hapmap]
rs7867018	0.86[CHB][hapmap]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv892625	chr9:15326251-16064850	Enhancers Active TSS Weak transcription Strong transcription Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	35 gene(s)	inside rSNPs	diseases
2	nsv892637	chr9:15926508-16060746	Enhancers Strong transcription Weak transcription Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
3	nsv949463	chr9:15970668-16377360	Enhancers ZNF genes & repeats Flanking Active TSS Weak transcription Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh Strong transcription Bivalent/Poised TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
4	nsv831521	chr9:15974174-16106565	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Strong transcription Bivalent/Poised TSS Active TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
5	nsv1025555	chr9:16022186-16064158	Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Active TSS Strong transcription Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:23 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:16018200-16028600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
2	chr9:16022600-16031800	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
3	chr9:16023600-16040600	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
4	chr9:16024200-16028200	Weak transcription	NHLF	lung
5	chr9:16024200-16028600	Weak transcription	HMEC	breast
6	chr9:16026000-16029600	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
7	chr9:16026000-16033400	Enhancers	Osteobl	bone
8	chr9:16026200-16028200	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
9	chr9:16026200-16039200	Weak transcription	Adipose Nuclei	Adipose
10	chr9:16026400-16028800	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
11	chr9:16026400-16033000	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
12	chr9:16026400-16039200	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
13	chr9:16027000-16028800	Enhancers	Muscle Satellite Cultured Cells	--
14	chr9:16027000-16029200	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
15	chr9:16027000-16030600	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
16	chr9:16027000-16031000	Enhancers	NH-A	brain
17	chr9:16027400-16028200	Enhancers	Fetal Kidney	kidney
18	chr9:16027600-16028400	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
19	chr9:16027600-16029800	Enhancers	HSMMtube	muscle
20	chr9:16027600-16030800	Enhancers	HSMM	muscle
21	chr9:16027800-16028800	Enhancers	Fetal Stomach	stomach
22	chr9:16027800-16031200	Enhancers	NHDF-Ad	bronchial
23	chr9:16028000-16030000	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived

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