Variant report

Variant	rs16938426
Chromosome Location	chr11:46003374-46003375
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:8)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:8 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr11:46002933..46004911-chr11:46139730..46142231,2	K562	blood:
2	chr11:45942896..45944721-chr11:46003049..46005001,2	K562	blood:
3	chr11:46000949..46006706-chr11:46011674..46018213,17	K562	blood:
4	chr11:45869552..45871506-chr11:46003139..46005373,2	K562	blood:
5	chr11:46002612..46004470-chr11:46141856..46143588,2	MCF-7	breast:
6	chr11:45990331..45993127-chr11:46002263..46005168,2	K562	blood:
7	chr11:45998746..46001549-chr11:46002921..46008009,7	K562	blood:
8	chr11:45997750..46001916-chr11:46003160..46008009,7	K562	blood:

No data

Variant related genes	Relation type
ENSG00000135365	Chromatin interaction
ENSG00000165905	Chromatin interaction

Extended variants
information (count: 15 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:14)

rs_ID	r²[population]
rs16938423	1.00[CHB][hapmap];1.00[JPT][hapmap];0.92[YRI][hapmap];0.86[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs16938430	1.00[CHB][hapmap];1.00[JPT][hapmap];0.92[YRI][hapmap];0.81[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs16938431	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.81[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs16938450	1.00[JPT][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs17789551	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17847257	1.00[EUR][1000 genomes]
rs2271846	1.00[JPT][hapmap];1.00[EUR][1000 genomes]
rs2271850	1.00[EUR][1000 genomes]
rs2280328	1.00[JPT][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs2280330	1.00[JPT][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs57199754	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs60623533	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs6485647	1.00[EUR][1000 genomes]
rs73455987	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv523952	chr11:45983385-46028281	Enhancers Weak transcription Active TSS Strong transcription Genic enhancers Flanking Active TSS	TF binding region CpG island Chromatin interactive region	8 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:117 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:45957200-46004400	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
2	chr11:45957200-46004400	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
3	chr11:45967600-46004600	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
4	chr11:45985800-46003800	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
5	chr11:45987000-46004000	Weak transcription	iPS-15b Cell Line	embryonic stem cell
6	chr11:45987600-46004600	Weak transcription	Gastric	stomach
7	chr11:45988400-46004400	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
8	chr11:45991000-46004400	Weak transcription	H9 Cell Line	embryonic stem cell
9	chr11:45991000-46004400	Weak transcription	A549	lung
10	chr11:45991800-46003600	Weak transcription	Brain Germinal Matrix	brain
11	chr11:45992200-46004400	Weak transcription	HMEC	breast
12	chr11:45992600-46003600	Weak transcription	Fetal Brain Male	brain
13	chr11:45992800-46003600	Weak transcription	Brain Angular Gyrus	brain
14	chr11:45992800-46004200	Weak transcription	HSMM	muscle
15	chr11:45992800-46004600	Weak transcription	Fetal Kidney	kidney
16	chr11:45993000-46003600	Weak transcription	H1 Cell Line	embryonic stem cell
17	chr11:45993000-46004200	Weak transcription	NHLF	lung
18	chr11:45993000-46004400	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
19	chr11:45993000-46004400	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
20	chr11:45993000-46004400	Weak transcription	Brain Cingulate Gyrus	brain
21	chr11:45993000-46004400	Weak transcription	Rectal Smooth Muscle	rectum
22	chr11:45993000-46004600	Weak transcription	Esophagus	oesophagus
23	chr11:45993000-46004600	Weak transcription	Spleen	Spleen
24	chr11:45993000-46015000	Weak transcription	Psoas Muscle	Psoas
25	chr11:45993000-46017600	Weak transcription	Sigmoid Colon	Sigmoid Colon
26	chr11:45993200-46004200	Weak transcription	HUVEC	blood vessel
27	chr11:45993600-46004600	Weak transcription	Small Intestine	intestine
28	chr11:45995400-46004000	Weak transcription	Pancreatic Islets	Pancreatic Islet
29	chr11:45996800-46004400	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
30	chr11:45996800-46004400	Weak transcription	NHDF-Ad	bronchial
31	chr11:45999000-46003800	Weak transcription	ES-I3 Cell Line	embryonic stem cell
32	chr11:46000200-46004600	Weak transcription	HepG2	liver
33	chr11:46000400-46003600	Weak transcription	Duodenum Mucosa	Duodenum
34	chr11:46000400-46004400	Weak transcription	Placenta Amnion	Placenta Amnion
35	chr11:46000400-46004400	Weak transcription	HSMMtube	muscle
36	chr11:46000400-46013000	Weak transcription	Fetal Intestine Large	intestine
37	chr11:46000600-46010400	Weak transcription	Hela-S3	cervix
38	chr11:46000800-46004000	Weak transcription	NH-A	brain
39	chr11:46000800-46004200	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
40	chr11:46000800-46004200	Weak transcription	Fetal Lung	lung
41	chr11:46000800-46006200	Enhancers	Fetal Heart	heart
42	chr11:46000800-46010200	Weak transcription	Liver	Liver
43	chr11:46000800-46012400	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
44	chr11:46001000-46015400	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
45	chr11:46001200-46004800	Enhancers	Skeletal Muscle Male	skeletal muscle
46	chr11:46001400-46003600	Weak transcription	HUES48 Cell Line	embryonic stem cell
47	chr11:46001400-46003600	Weak transcription	Brain Inferior Temporal Lobe	brain
48	chr11:46001400-46003600	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
49	chr11:46001400-46003600	Weak transcription	Ovary	ovary
50	chr11:46001400-46004000	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links