Variant report

Variant	rs73455987
Chromosome Location	chr11:46129748-46129749
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr11:46128096..46131028-chr11:46343420..46346390,2	K562	blood:
2	chr11:46121453..46123164-chr11:46129213..46131508,2	MCF-7	breast:
3	chr11:46126556..46131545-chr11:46139597..46143863,6	K562	blood:
4	chr11:45864922..45867381-chr11:46128289..46130207,2	K562	blood:
5	chr11:46129508..46131169-chr11:46259258..46261236,2	K562	blood:

Variant related genes	Relation type
ENSG00000254639	Chromatin interaction
ENSG00000135365	Chromatin interaction

rs_ID	r²[population]
rs16938423	1.00[EUR][1000 genomes]
rs16938426	1.00[EUR][1000 genomes]
rs16938430	1.00[EUR][1000 genomes]
rs16938431	1.00[EUR][1000 genomes]
rs16938450	1.00[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs17789551	1.00[EUR][1000 genomes]
rs17847257	1.00[EUR][1000 genomes]
rs2271846	1.00[EUR][1000 genomes]
rs2271850	1.00[EUR][1000 genomes]
rs2280328	1.00[EUR][1000 genomes]
rs2280330	1.00[EUR][1000 genomes]
rs57199754	1.00[EUR][1000 genomes]
rs57321515	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs60623533	1.00[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs61745747	1.00[AMR][1000 genomes]
rs6485647	1.00[EUR][1000 genomes]
rs73455946	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]

Chromatin state (count:89 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:46106400-46131800	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
2	chr11:46111600-46130400	Weak transcription	Fetal Stomach	stomach
3	chr11:46112600-46130400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
4	chr11:46119000-46131200	Weak transcription	Esophagus	oesophagus
5	chr11:46121800-46139200	Weak transcription	Rectal Mucosa Donor 31	rectum
6	chr11:46122000-46139600	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
7	chr11:46122400-46129800	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
8	chr11:46122600-46131200	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
9	chr11:46122600-46135400	Weak transcription	Primary B cells from cord blood	blood
10	chr11:46122600-46140400	Weak transcription	Sigmoid Colon	Sigmoid Colon
11	chr11:46122600-46140400	Weak transcription	Stomach Smooth Muscle	stomach
12	chr11:46122800-46130400	Weak transcription	A549	lung
13	chr11:46122800-46134200	Weak transcription	Primary T helper naive cells from peripheral blood	blood
14	chr11:46122800-46134200	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
15	chr11:46122800-46134400	Weak transcription	Duodenum Smooth Muscle	Duodenum
16	chr11:46123400-46137400	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
17	chr11:46123800-46138200	Weak transcription	Primary T cells fromperipheralblood	blood
18	chr11:46126200-46129800	Flanking Active TSS	K562	blood
19	chr11:46126200-46134200	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
20	chr11:46127000-46133400	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
21	chr11:46127000-46134400	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
22	chr11:46127000-46135800	Weak transcription	Left Ventricle	heart
23	chr11:46127000-46139400	Weak transcription	NHEK	skin
24	chr11:46127000-46140000	Weak transcription	Osteobl	bone
25	chr11:46127000-46140800	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
26	chr11:46127000-46140800	Weak transcription	Pancreas	Pancrea
27	chr11:46127200-46129800	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
28	chr11:46127200-46131200	Weak transcription	Psoas Muscle	Psoas
29	chr11:46127200-46132800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
30	chr11:46127200-46133000	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
31	chr11:46127200-46133600	Weak transcription	GM12878-XiMat	blood
32	chr11:46127200-46134200	Weak transcription	Primary T helper cells PMA-I stimulated	--
33	chr11:46127200-46134200	Weak transcription	Liver	Liver
34	chr11:46127200-46134400	Weak transcription	Primary T cells from cord blood	blood
35	chr11:46127200-46135800	Weak transcription	Primary T killer memory cells from peripheral blood	blood
36	chr11:46127200-46136000	Weak transcription	Dnd41	blood
37	chr11:46127200-46138200	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
38	chr11:46127200-46139600	Weak transcription	Right Atrium	heart
39	chr11:46127200-46140600	Weak transcription	Small Intestine	intestine
40	chr11:46128000-46134400	Weak transcription	Primary T helper cells fromperipheralblood	blood
41	chr11:46128200-46130400	Weak transcription	Rectal Smooth Muscle	rectum
42	chr11:46128200-46131200	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
43	chr11:46128400-46129800	Enhancers	Pancreatic Islets	Pancreatic Islet
44	chr11:46128400-46130400	Weak transcription	Fetal Lung	lung
45	chr11:46128400-46131200	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
46	chr11:46128400-46134400	Weak transcription	Muscle Satellite Cultured Cells	--
47	chr11:46128400-46134400	Weak transcription	Skeletal Muscle Male	skeletal muscle
48	chr11:46128400-46134600	Weak transcription	Brain Germinal Matrix	brain
49	chr11:46128400-46138800	Weak transcription	NHDF-Ad	bronchial
50	chr11:46128400-46139400	Weak transcription	Thymus	Thymus

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