Variant report

Variant	rs16938430
Chromosome Location	chr11:46022934-46022935
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr11:46021583..46025208-chr11:46025456..46028440,3	K562	blood:
2	chr11:46022169..46024500-chr11:46257893..46260465,2	K562	blood:

Variant related genes	Relation type
ENSG00000254639	Chromatin interaction

Extended variants
information (count: 15 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:14)

rs_ID	r²[population]
rs16938423	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs16938426	1.00[CHB][hapmap];1.00[JPT][hapmap];0.92[YRI][hapmap];0.81[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs16938431	1.00[CHB][hapmap];1.00[JPT][hapmap];0.91[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16938450	1.00[JPT][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs17789551	1.00[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs17847257	1.00[EUR][1000 genomes]
rs2271846	1.00[JPT][hapmap];1.00[EUR][1000 genomes]
rs2271850	1.00[EUR][1000 genomes]
rs2280328	1.00[JPT][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs2280330	1.00[JPT][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs57199754	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs60623533	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6485647	1.00[EUR][1000 genomes]
rs73455987	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv523952	chr11:45983385-46028281	Enhancers Weak transcription Active TSS Strong transcription Genic enhancers Flanking Active TSS	TF binding region CpG island Chromatin interactive region	8 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:76 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:46001400-46070400	Weak transcription	Primary hematopoietic stem cells	blood
2	chr11:46002000-46025000	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
3	chr11:46002000-46042400	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
4	chr11:46002000-46056200	Weak transcription	Primary T helper cells fromperipheralblood	blood
5	chr11:46002200-46024800	Weak transcription	Primary neutrophils fromperipheralblood	blood
6	chr11:46002200-46025000	Weak transcription	Primary monocytes fromperipheralblood	blood
7	chr11:46002600-46023200	Weak transcription	Primary B cells from peripheral blood	blood
8	chr11:46006200-46025200	Weak transcription	Monocytes-CD14+_RO01746	blood
9	chr11:46012800-46031000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
10	chr11:46012800-46062800	Weak transcription	GM12878-XiMat	blood
11	chr11:46015600-46026400	Weak transcription	Stomach Mucosa	stomach
12	chr11:46016200-46048200	Weak transcription	Esophagus	oesophagus
13	chr11:46016400-46023000	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
14	chr11:46016400-46025200	Weak transcription	Right Atrium	heart
15	chr11:46016600-46023000	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
16	chr11:46016800-46023000	Weak transcription	Stomach Smooth Muscle	stomach
17	chr11:46016800-46025200	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
18	chr11:46016800-46044000	Weak transcription	Primary T cells from cord blood	blood
19	chr11:46017000-46023000	Weak transcription	Brain Anterior Caudate	brain
20	chr11:46017000-46023200	Weak transcription	Brain Angular Gyrus	brain
21	chr11:46017000-46032000	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
22	chr11:46017400-46024800	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
23	chr11:46019600-46023000	Weak transcription	Skeletal Muscle Female	skeletal muscle
24	chr11:46019800-46025000	Weak transcription	Skeletal Muscle Male	skeletal muscle
25	chr11:46019800-46025200	Weak transcription	H9 Cell Line	embryonic stem cell
26	chr11:46020000-46023000	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
27	chr11:46020600-46024800	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
28	chr11:46020600-46026800	Enhancers	Fetal Brain Male	brain
29	chr11:46021400-46023200	Enhancers	H1 Cell Line	embryonic stem cell
30	chr11:46021600-46025600	Enhancers	ES-I3 Cell Line	embryonic stem cell
31	chr11:46022000-46023600	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
32	chr11:46022000-46026200	Weak transcription	K562	blood
33	chr11:46022000-46033600	Weak transcription	Primary B cells from cord blood	blood
34	chr11:46022000-46074600	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
35	chr11:46022400-46023600	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
36	chr11:46022400-46023800	Enhancers	ES-WA7 Cell Line	embryonic stem cell
37	chr11:46022400-46025400	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
38	chr11:46022600-46023000	Flanking Active TSS	HUES48 Cell Line	embryonic stem cell
39	chr11:46022600-46023000	Flanking Active TSS	HUES64 Cell Line	embryonic stem cell
40	chr11:46022600-46023000	Flanking Active TSS	iPS-20b Cell Line	embryonic stem cell
41	chr11:46022600-46023000	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
42	chr11:46022600-46023000	Enhancers	Brain Hippocampus Middle	brain
43	chr11:46022600-46023200	Enhancers	Colon Smooth Muscle	Colon
44	chr11:46022600-46023200	Flanking Active TSS	HSMMtube	muscle
45	chr11:46022600-46023400	Flanking Active TSS	iPS-18 Cell Line	embryonic stem cell
46	chr11:46022600-46023800	Enhancers	NH-A	brain
47	chr11:46022600-46024400	Enhancers	Fetal Stomach	stomach
48	chr11:46022600-46024600	Enhancers	Muscle Satellite Cultured Cells	--
49	chr11:46022600-46025400	Enhancers	NHDF-Ad	bronchial
50	chr11:46022600-46025400	Enhancers	NHLF	lung

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