Variant report

Variant	rs16938431
Chromosome Location	chr11:46025028-46025029
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr11:46024538..46028805-chr11:46032055..46036011,4	K562	blood:
2	chr11:46021583..46025208-chr11:46025456..46028440,3	K562	blood:

Extended variants
information (count: 16 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:14)

rs_ID	r²[population]
rs16938423	1.00[CHB][hapmap];1.00[JPT][hapmap];0.92[YRI][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs16938426	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.81[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs16938430	1.00[CHB][hapmap];1.00[JPT][hapmap];0.91[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16938450	1.00[JPT][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs17789551	1.00[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs17847257	1.00[EUR][1000 genomes]
rs2271846	1.00[JPT][hapmap];1.00[EUR][1000 genomes]
rs2271850	1.00[EUR][1000 genomes]
rs2280328	1.00[JPT][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs2280330	1.00[JPT][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs57199754	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs60623533	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6485647	1.00[EUR][1000 genomes]
rs73455987	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv523952	chr11:45983385-46028281	Enhancers Weak transcription Active TSS Strong transcription Genic enhancers Flanking Active TSS	TF binding region CpG island Chromatin interactive region	8 gene(s)	inside rSNPs	diseases
2	nsv522527	chr11:46024183-46033104	Enhancers Weak transcription Strong transcription Flanking Active TSS	Chromatin interactive region	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:67 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:46001400-46070400	Weak transcription	Primary hematopoietic stem cells	blood
2	chr11:46002000-46042400	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
3	chr11:46002000-46056200	Weak transcription	Primary T helper cells fromperipheralblood	blood
4	chr11:46006200-46025200	Weak transcription	Monocytes-CD14+_RO01746	blood
5	chr11:46012800-46031000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
6	chr11:46012800-46062800	Weak transcription	GM12878-XiMat	blood
7	chr11:46015600-46026400	Weak transcription	Stomach Mucosa	stomach
8	chr11:46016200-46048200	Weak transcription	Esophagus	oesophagus
9	chr11:46016400-46025200	Weak transcription	Right Atrium	heart
10	chr11:46016800-46025200	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
11	chr11:46016800-46044000	Weak transcription	Primary T cells from cord blood	blood
12	chr11:46017000-46032000	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
13	chr11:46019800-46025200	Weak transcription	H9 Cell Line	embryonic stem cell
14	chr11:46020600-46026800	Enhancers	Fetal Brain Male	brain
15	chr11:46021600-46025600	Enhancers	ES-I3 Cell Line	embryonic stem cell
16	chr11:46022000-46026200	Weak transcription	K562	blood
17	chr11:46022000-46033600	Weak transcription	Primary B cells from cord blood	blood
18	chr11:46022000-46074600	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
19	chr11:46022400-46025400	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
20	chr11:46022600-46025400	Enhancers	NHDF-Ad	bronchial
21	chr11:46022600-46025400	Enhancers	NHLF	lung
22	chr11:46022600-46026000	Enhancers	Osteobl	bone
23	chr11:46022600-46026400	Enhancers	HSMM	muscle
24	chr11:46022600-46028200	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
25	chr11:46022800-46026400	Enhancers	Cortex derived primary cultured neurospheres	brain
26	chr11:46022800-46026600	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
27	chr11:46023000-46026000	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
28	chr11:46023000-46028000	Enhancers	iPS-15b Cell Line	embryonic stem cell
29	chr11:46023000-46029000	Enhancers	HUES48 Cell Line	embryonic stem cell
30	chr11:46023200-46025200	Weak transcription	Colon Smooth Muscle	Colon
31	chr11:46023200-46025600	Enhancers	HSMMtube	muscle
32	chr11:46023200-46026400	Enhancers	Fetal Brain Female	brain
33	chr11:46023400-46025200	Weak transcription	Brain Substantia Nigra	brain
34	chr11:46023400-46025200	Weak transcription	Fetal Heart	heart
35	chr11:46023400-46026400	Enhancers	iPS-18 Cell Line	embryonic stem cell
36	chr11:46023400-46027600	Weak transcription	Skeletal Muscle Female	skeletal muscle
37	chr11:46023400-46038200	Weak transcription	A549	lung
38	chr11:46023400-46041800	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
39	chr11:46023400-46047800	Weak transcription	Breast Myoepithelial Primary Cells	Breast
40	chr11:46023400-46048200	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
41	chr11:46023600-46025200	Weak transcription	Duodenum Smooth Muscle	Duodenum
42	chr11:46023600-46025800	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
43	chr11:46023600-46027000	Enhancers	HUES64 Cell Line	embryonic stem cell
44	chr11:46023600-46041600	Weak transcription	Ovary	ovary
45	chr11:46023600-46046400	Weak transcription	Stomach Smooth Muscle	stomach
46	chr11:46024000-46026800	Enhancers	iPS-20b Cell Line	embryonic stem cell
47	chr11:46024000-46028000	Weak transcription	Brain Cingulate Gyrus	brain
48	chr11:46024200-46025200	Weak transcription	H1 Cell Line	embryonic stem cell
49	chr11:46024400-46026600	Weak transcription	Fetal Stomach	stomach
50	chr11:46024600-46025200	Weak transcription	Muscle Satellite Cultured Cells	--

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