Variant report

Variant	rs16938450
Chromosome Location	chr11:46097634-46097635
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr11:46027780..46028615-chr11:46097223..46097734,2	MCF-7	breast:
2	chr11:45986047..45986874-chr11:46097120..46098139,3	MCF-7	breast:
3	chr11:46096861..46098706-chr11:46257975..46260670,2	K562	blood:
4	chr11:46095650..46098498-chr11:46142046..46144751,2	K562	blood:

Variant related genes	Relation type
ENSG00000135365	Chromatin interaction
ENSG00000254639	Chromatin interaction

Extended variants
information (count: 14 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:14)

rs_ID	r²[population]
rs16938423	1.00[JPT][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs16938426	1.00[JPT][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs16938430	1.00[JPT][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs16938431	1.00[JPT][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs17789551	1.00[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs17847257	1.00[EUR][1000 genomes]
rs2271846	1.00[JPT][hapmap];1.00[EUR][1000 genomes]
rs2271850	1.00[EUR][1000 genomes]
rs2280328	1.00[JPT][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs2280330	1.00[JPT][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs57199754	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs60623533	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6485647	1.00[EUR][1000 genomes]
rs73455987	1.00[EUR][1000 genomes];0.85[ASN][1000 genomes]

No data

Chromatin state (count:114 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:46062000-46100800	Weak transcription	Brain Cingulate Gyrus	brain
2	chr11:46063200-46119800	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
3	chr11:46063600-46098000	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
4	chr11:46063600-46104600	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
5	chr11:46071200-46097800	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
6	chr11:46071400-46097800	Weak transcription	Fetal Muscle Trunk	muscle
7	chr11:46071400-46114800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
8	chr11:46071400-46118800	Weak transcription	Lung	lung
9	chr11:46072000-46100800	Weak transcription	Thymus	Thymus
10	chr11:46072000-46101000	Weak transcription	Brain Anterior Caudate	brain
11	chr11:46072000-46119400	Weak transcription	Brain Angular Gyrus	brain
12	chr11:46072600-46100800	Weak transcription	Placenta	Placenta
13	chr11:46073200-46101000	Weak transcription	Primary hematopoietic stem cells short term culture	blood
14	chr11:46073200-46101800	Weak transcription	Fetal Stomach	stomach
15	chr11:46073800-46122200	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
16	chr11:46074200-46101200	Weak transcription	Brain Substantia Nigra	brain
17	chr11:46077600-46109400	Weak transcription	HepG2	liver
18	chr11:46079000-46128200	Weak transcription	Aorta	Aorta
19	chr11:46079600-46102200	Weak transcription	H9 Cell Line	embryonic stem cell
20	chr11:46080400-46120800	Weak transcription	Stomach Smooth Muscle	stomach
21	chr11:46080600-46103000	Weak transcription	Sigmoid Colon	Sigmoid Colon
22	chr11:46082000-46114000	Strong transcription	Monocytes-CD14+_RO01746	blood
23	chr11:46083600-46107600	Strong transcription	Primary monocytes fromperipheralblood	blood
24	chr11:46084800-46104800	Weak transcription	Fetal Brain Male	brain
25	chr11:46084800-46118600	Weak transcription	Pancreas	Pancrea
26	chr11:46085000-46119600	Weak transcription	Brain Germinal Matrix	brain
27	chr11:46085400-46106000	Strong transcription	Primary neutrophils fromperipheralblood	blood
28	chr11:46085800-46111000	Weak transcription	Placenta Amnion	Placenta Amnion
29	chr11:46086600-46112200	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
30	chr11:46086800-46099400	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
31	chr11:46087000-46099400	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
32	chr11:46087200-46120800	Weak transcription	H1 Cell Line	embryonic stem cell
33	chr11:46087400-46103800	Weak transcription	HUES48 Cell Line	embryonic stem cell
34	chr11:46087400-46104000	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
35	chr11:46087600-46120400	Weak transcription	HSMMtube	muscle
36	chr11:46087600-46121000	Weak transcription	Primary T helper naive cells from peripheral blood	blood
37	chr11:46087800-46098200	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
38	chr11:46089200-46099600	Strong transcription	Primary hematopoietic stem cells	blood
39	chr11:46089600-46120400	Weak transcription	Rectal Mucosa Donor 31	rectum
40	chr11:46089800-46109600	Weak transcription	Fetal Kidney	kidney
41	chr11:46089800-46111400	Weak transcription	Hela-S3	cervix
42	chr11:46091200-46097800	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
43	chr11:46091600-46101000	Weak transcription	Duodenum Mucosa	Duodenum
44	chr11:46091600-46101600	Weak transcription	Spleen	Spleen
45	chr11:46092600-46112200	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
46	chr11:46092800-46113200	Weak transcription	Small Intestine	intestine
47	chr11:46093000-46099000	Weak transcription	Fetal Intestine Large	intestine
48	chr11:46093000-46101000	Weak transcription	Esophagus	oesophagus
49	chr11:46093400-46120000	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
50	chr11:46093800-46098800	Strong transcription	Breast Myoepithelial Primary Cells	Breast

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