Variant report

Variant	rs16940409
Chromosome Location	chr15:58807788-58807789
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr15:58797035..58800948-chr15:58803702..58808140,4	K562	blood:
2	chr15:58800669..58805424-chr15:58807712..58810883,4	K562	blood:

Extended variants
information (count: 17 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:11)

rs_ID	r²[population]
rs16940451	1.00[EUR][1000 genomes]
rs41292498	1.00[EUR][1000 genomes]
rs4561401	1.00[EUR][1000 genomes]
rs687016	1.00[EUR][1000 genomes]
rs7164116	1.00[EUR][1000 genomes]
rs7171589	1.00[EUR][1000 genomes]
rs73424689	1.00[EUR][1000 genomes]
rs74019117	1.00[EUR][1000 genomes]
rs74019120	1.00[EUR][1000 genomes]
rs74019121	1.00[EUR][1000 genomes]
rs74019124	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1051058	chr15:58519922-59092530	Strong transcription Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	50 gene(s)	inside rSNPs	diseases
2	nsv542401	chr15:58519922-59092530	Strong transcription Weak transcription Active TSS Flanking Active TSS Enhancers Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	50 gene(s)	inside rSNPs	diseases
3	nsv569598	chr15:58552606-58852463	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Bivalent Enhancer Genic enhancers Strong transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases
4	esv3362898	chr15:58705732-58850860	ZNF genes & repeats Flanking Active TSS Enhancers Weak transcription Genic enhancers Bivalent Enhancer Active TSS Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
5	nsv1043041	chr15:58744505-58876327	Weak transcription Enhancers Flanking Active TSS Bivalent Enhancer Strong transcription ZNF genes & repeats Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
6	nsv569601	chr15:58800766-58866156	Weak transcription Enhancers Flanking Active TSS Active TSS Bivalent Enhancer Strong transcription Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:31 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:58791400-58809400	Weak transcription	Spleen	Spleen
2	chr15:58798600-58807800	Weak transcription	Rectal Mucosa Donor 29	rectum
3	chr15:58798600-58813200	Weak transcription	Aorta	Aorta
4	chr15:58798800-58807800	Weak transcription	Primary B cells from cord blood	blood
5	chr15:58798800-58812600	Weak transcription	Left Ventricle	heart
6	chr15:58799200-58809400	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
7	chr15:58799400-58807800	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
8	chr15:58803600-58811800	Weak transcription	Brain Inferior Temporal Lobe	brain
9	chr15:58803800-58807800	Weak transcription	Sigmoid Colon	Sigmoid Colon
10	chr15:58803800-58812600	Weak transcription	Esophagus	oesophagus
11	chr15:58804000-58816200	Weak transcription	Liver	Liver
12	chr15:58804200-58807800	Weak transcription	Monocytes-CD14+_RO01746	blood
13	chr15:58805000-58807800	Weak transcription	Primary monocytes fromperipheralblood	blood
14	chr15:58805000-58809200	Weak transcription	Placenta	Placenta
15	chr15:58805800-58809200	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
16	chr15:58806200-58807800	Weak transcription	Primary T helper naive cells from peripheral blood	blood
17	chr15:58806200-58813200	Weak transcription	Fetal Muscle Trunk	muscle
18	chr15:58806400-58808000	Weak transcription	Primary T cells fromperipheralblood	blood
19	chr15:58806400-58808000	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
20	chr15:58806400-58809400	Weak transcription	Breast Myoepithelial Primary Cells	Breast
21	chr15:58806400-58812600	Weak transcription	Skeletal Muscle Male	skeletal muscle
22	chr15:58806400-58813200	Weak transcription	Pancreas	Pancrea
23	chr15:58806600-58809400	Weak transcription	HSMMtube	muscle
24	chr15:58807000-58812600	Enhancers	Primary T cells from cord blood	blood
25	chr15:58807000-58813400	Weak transcription	Fetal Brain Male	brain
26	chr15:58807200-58809600	Enhancers	Primary neutrophils fromperipheralblood	blood
27	chr15:58807200-58809600	Enhancers	Primary T helper cells PMA-I stimulated	--
28	chr15:58807400-58808000	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
29	chr15:58807400-58808400	Enhancers	HepG2	liver
30	chr15:58807400-58808600	Enhancers	Thymus	Thymus
31	chr15:58807600-58815400	Enhancers	Fetal Thymus	thymus

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