Variant report

Variant	rs4561401
Chromosome Location	chr15:58784077-58784078
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr15:58765282..58766825-chr15:58783128..58785341,2	K562	blood:
2	chr15:58783009..58786824-chr15:58787772..58790243,5	K562	blood:
3	chr15:58778802..58780678-chr15:58783257..58786951,3	K562	blood:

Variant related genes	Relation type
ENSG00000128918	Chromatin interaction

Extended variants
information (count: 25 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:18)

rs_ID	r²[population]
rs16940339	1.00[AMR][1000 genomes]
rs16940344	1.00[AMR][1000 genomes]
rs16940409	1.00[EUR][1000 genomes]
rs16940451	1.00[EUR][1000 genomes]
rs261335	1.00[AMR][1000 genomes]
rs41292488	1.00[AMR][1000 genomes]
rs41292498	1.00[EUR][1000 genomes]
rs687016	1.00[EUR][1000 genomes]
rs7162746	1.00[AMR][1000 genomes]
rs7164116	1.00[EUR][1000 genomes]
rs7171589	1.00[EUR][1000 genomes]
rs73422639	1.00[AMR][1000 genomes]
rs73424689	1.00[EUR][1000 genomes]
rs74016190	1.00[AMR][1000 genomes]
rs74019117	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs74019120	1.00[EUR][1000 genomes]
rs74019121	1.00[EUR][1000 genomes]
rs74019124	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1051058	chr15:58519922-59092530	Strong transcription Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	50 gene(s)	inside rSNPs	diseases
2	nsv542401	chr15:58519922-59092530	Strong transcription Weak transcription Active TSS Flanking Active TSS Enhancers Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	50 gene(s)	inside rSNPs	diseases
3	nsv569598	chr15:58552606-58852463	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Bivalent Enhancer Genic enhancers Strong transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases
4	nsv1047048	chr15:58701400-58784800	Weak transcription Active TSS Enhancers ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
5	esv3362898	chr15:58705732-58850860	ZNF genes & repeats Flanking Active TSS Enhancers Weak transcription Genic enhancers Bivalent Enhancer Active TSS Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
6	nsv1043041	chr15:58744505-58876327	Weak transcription Enhancers Flanking Active TSS Bivalent Enhancer Strong transcription ZNF genes & repeats Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
7	nsv904268	chr15:58763678-58803225	Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:37 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:58780200-58787800	Weak transcription	Fetal Kidney	kidney
2	chr15:58780800-58786200	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
3	chr15:58782400-58784200	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
4	chr15:58782400-58785600	Enhancers	Fetal Muscle Leg	muscle
5	chr15:58782600-58784200	Enhancers	HMEC	breast
6	chr15:58782600-58785600	Enhancers	Fetal Muscle Trunk	muscle
7	chr15:58782600-58785600	Enhancers	HSMMtube	muscle
8	chr15:58782600-58789400	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
9	chr15:58782800-58784200	Weak transcription	Brain Hippocampus Middle	brain
10	chr15:58782800-58785600	Enhancers	Psoas Muscle	Psoas
11	chr15:58782800-58785600	Enhancers	Skeletal Muscle Male	skeletal muscle
12	chr15:58783000-58784400	Enhancers	Right Atrium	heart
13	chr15:58783000-58785000	Enhancers	Skeletal Muscle Female	skeletal muscle
14	chr15:58783000-58785600	Enhancers	Breast Myoepithelial Primary Cells	Breast
15	chr15:58783000-58785600	Enhancers	HSMM	muscle
16	chr15:58783200-58784200	Enhancers	Adipose Nuclei	Adipose
17	chr15:58783200-58784800	Weak transcription	Primary hematopoietic stem cells short term culture	blood
18	chr15:58783200-58786400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
19	chr15:58783200-58789400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
20	chr15:58783400-58784200	Enhancers	Right Ventricle	heart
21	chr15:58783400-58784400	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
22	chr15:58783400-58784400	Enhancers	Liver	Liver
23	chr15:58783400-58788400	Weak transcription	Primary monocytes fromperipheralblood	blood
24	chr15:58783400-58789600	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
25	chr15:58783400-58791600	Enhancers	Fetal Thymus	thymus
26	chr15:58783800-58784200	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
27	chr15:58783800-58785200	Enhancers	Brain Substantia Nigra	brain
28	chr15:58783800-58785400	Enhancers	Brain Inferior Temporal Lobe	brain
29	chr15:58783800-58788200	Weak transcription	Placenta Amnion	Placenta Amnion
30	chr15:58784000-58784200	Enhancers	Left Ventricle	heart
31	chr15:58784000-58784400	Enhancers	Brain Angular Gyrus	brain
32	chr15:58784000-58784400	Enhancers	Brain Anterior Caudate	brain
33	chr15:58784000-58784400	Enhancers	Esophagus	oesophagus
34	chr15:58784000-58784400	Enhancers	Pancreas	Pancrea
35	chr15:58784000-58785600	Enhancers	Thymus	Thymus
36	chr15:58784000-58794800	Weak transcription	Stomach Mucosa	stomach
37	chr15:58784000-58797800	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin

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