Variant report

Variant	rs7171589
Chromosome Location	chr15:58824921-58824922
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 18 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:11)

rs_ID	r²[population]
rs16940409	1.00[EUR][1000 genomes]
rs16940451	1.00[EUR][1000 genomes]
rs41292498	1.00[EUR][1000 genomes]
rs4561401	1.00[EUR][1000 genomes]
rs687016	1.00[EUR][1000 genomes]
rs7164116	1.00[EUR][1000 genomes]
rs73424689	1.00[EUR][1000 genomes]
rs74019117	1.00[EUR][1000 genomes]
rs74019120	1.00[EUR][1000 genomes]
rs74019121	1.00[EUR][1000 genomes]
rs74019124	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1051058	chr15:58519922-59092530	Strong transcription Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	50 gene(s)	inside rSNPs	diseases
2	nsv542401	chr15:58519922-59092530	Strong transcription Weak transcription Active TSS Flanking Active TSS Enhancers Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	50 gene(s)	inside rSNPs	diseases
3	nsv569598	chr15:58552606-58852463	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Bivalent Enhancer Genic enhancers Strong transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases
4	esv3362898	chr15:58705732-58850860	ZNF genes & repeats Flanking Active TSS Enhancers Weak transcription Genic enhancers Bivalent Enhancer Active TSS Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
5	nsv1043041	chr15:58744505-58876327	Weak transcription Enhancers Flanking Active TSS Bivalent Enhancer Strong transcription ZNF genes & repeats Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
6	nsv569601	chr15:58800766-58866156	Weak transcription Enhancers Flanking Active TSS Active TSS Bivalent Enhancer Strong transcription Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
7	nsv524098	chr15:58820978-58834391	Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS Strong transcription ZNF genes & repeats	TF binding region Chromatin interactive region	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:14 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:58818000-58825200	Enhancers	Breast Myoepithelial Primary Cells	Breast
2	chr15:58821000-58826400	Weak transcription	Colonic Mucosa	Colon
3	chr15:58821000-58827400	Weak transcription	Rectal Mucosa Donor 29	rectum
4	chr15:58821200-58832200	Weak transcription	Fetal Kidney	kidney
5	chr15:58821400-58826200	Weak transcription	Rectal Mucosa Donor 31	rectum
6	chr15:58821600-58825000	Weak transcription	A549	lung
7	chr15:58821600-58838000	Weak transcription	Right Atrium	heart
8	chr15:58822400-58827200	Weak transcription	HepG2	liver
9	chr15:58822600-58827600	Weak transcription	Pancreas	Pancrea
10	chr15:58823200-58829400	Weak transcription	Liver	Liver
11	chr15:58823600-58825600	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
12	chr15:58824400-58825000	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
13	chr15:58824400-58825000	Enhancers	Gastric	stomach
14	chr15:58824800-58825400	Enhancers	Stomach Mucosa	stomach

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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