Variant report

Variant	rs73424689
Chromosome Location	chr15:58816123-58816124
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr15:58814659..58816490-chr15:58819397..58821413,2	MCF-7	breast:
2	chr15:58815189..58818138-chr15:58821018..58822626,2	K562	blood:
3	chr15:58814045..58816618-chr15:58898707..58900922,2	MCF-7	breast:
4	chr15:58813787..58816646-chr15:58861427..58864530,3	K562	blood:
5	chr15:58815957..58817851-chr15:58819397..58821378,2	MCF-7	breast:
6	chr15:58815750..58818981-chr15:58825032..58827694,3	K562	blood:
7	chr15:58812962..58815052-chr15:58815681..58818546,2	K562	blood:

Variant related genes	Relation type
ENSG00000259476	Chromatin interaction

Extended variants
information (count: 19 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:13)

rs_ID	r²[population]
rs16940409	1.00[EUR][1000 genomes]
rs16940436	1.00[AMR][1000 genomes]
rs16940451	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs41292498	1.00[EUR][1000 genomes]
rs4561401	1.00[EUR][1000 genomes]
rs687016	1.00[EUR][1000 genomes]
rs7164116	1.00[EUR][1000 genomes]
rs7171589	1.00[EUR][1000 genomes]
rs74019117	1.00[EUR][1000 genomes]
rs74019120	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs74019121	1.00[EUR][1000 genomes]
rs74019124	1.00[EUR][1000 genomes]
rs867957	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1051058	chr15:58519922-59092530	Strong transcription Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	50 gene(s)	inside rSNPs	diseases
2	nsv542401	chr15:58519922-59092530	Strong transcription Weak transcription Active TSS Flanking Active TSS Enhancers Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	50 gene(s)	inside rSNPs	diseases
3	nsv569598	chr15:58552606-58852463	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Bivalent Enhancer Genic enhancers Strong transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases
4	esv3362898	chr15:58705732-58850860	ZNF genes & repeats Flanking Active TSS Enhancers Weak transcription Genic enhancers Bivalent Enhancer Active TSS Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
5	nsv1043041	chr15:58744505-58876327	Weak transcription Enhancers Flanking Active TSS Bivalent Enhancer Strong transcription ZNF genes & repeats Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
6	nsv569601	chr15:58800766-58866156	Weak transcription Enhancers Flanking Active TSS Active TSS Bivalent Enhancer Strong transcription Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:47 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:58804000-58816200	Weak transcription	Liver	Liver
2	chr15:58807800-58820200	Enhancers	Primary monocytes fromperipheralblood	blood
3	chr15:58808400-58816200	Weak transcription	HepG2	liver
4	chr15:58809600-58817000	Enhancers	Brain Substantia Nigra	brain
5	chr15:58812600-58816200	Enhancers	Left Ventricle	heart
6	chr15:58812600-58816400	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
7	chr15:58812600-58816800	Enhancers	Skeletal Muscle Male	skeletal muscle
8	chr15:58812600-58818000	Enhancers	Placenta	Placenta
9	chr15:58812800-58818600	Weak transcription	Gastric	stomach
10	chr15:58813200-58817000	Enhancers	Breast Myoepithelial Primary Cells	Breast
11	chr15:58813600-58816800	Enhancers	Foreskin Melanocyte Primary Cells skin01	Skin
12	chr15:58813800-58816200	Enhancers	Monocytes-CD14+_RO01746	blood
13	chr15:58813800-58819000	Weak transcription	Fetal Intestine Large	intestine
14	chr15:58813800-58819000	Weak transcription	Rectal Mucosa Donor 29	rectum
15	chr15:58814000-58817000	Enhancers	Primary hematopoietic stem cells short term culture	blood
16	chr15:58814000-58819000	Weak transcription	Stomach Mucosa	stomach
17	chr15:58814200-58816400	Weak transcription	Primary T cells from cord blood	blood
18	chr15:58814200-58817000	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
19	chr15:58814400-58816200	Bivalent Enhancer	Fetal Muscle Trunk	muscle
20	chr15:58814600-58819000	Enhancers	Primary neutrophils fromperipheralblood	blood
21	chr15:58814600-58819400	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
22	chr15:58814600-58819600	Weak transcription	Fetal Kidney	kidney
23	chr15:58815000-58816800	Enhancers	Ovary	ovary
24	chr15:58815000-58818200	Weak transcription	NHDF-Ad	bronchial
25	chr15:58815000-58819400	Weak transcription	Lung	lung
26	chr15:58815000-58819600	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
27	chr15:58815200-58820000	Weak transcription	Colon Smooth Muscle	Colon
28	chr15:58815400-58817600	Weak transcription	Right Ventricle	heart
29	chr15:58815400-58818200	Weak transcription	Fetal Thymus	thymus
30	chr15:58815400-58818200	Weak transcription	Right Atrium	heart
31	chr15:58815400-58819200	Weak transcription	Esophagus	oesophagus
32	chr15:58815400-58819600	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
33	chr15:58815400-58820000	Weak transcription	Stomach Smooth Muscle	stomach
34	chr15:58815400-58820800	Weak transcription	Spleen	Spleen
35	chr15:58815600-58816800	Enhancers	Skeletal Muscle Female	skeletal muscle
36	chr15:58815600-58818400	Weak transcription	Adipose Nuclei	Adipose
37	chr15:58815600-58818400	Weak transcription	Aorta	Aorta
38	chr15:58815600-58820800	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
39	chr15:58815600-58821000	Weak transcription	NHEK	skin
40	chr15:58815800-58816200	Weak transcription	Primary B cells from cord blood	blood
41	chr15:58815800-58818200	Weak transcription	Brain Hippocampus Middle	brain
42	chr15:58815800-58818200	Weak transcription	Brain Inferior Temporal Lobe	brain
43	chr15:58815800-58818600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
44	chr15:58815800-58820000	Weak transcription	Psoas Muscle	Psoas
45	chr15:58816000-58816200	Enhancers	Pancreas	Pancrea
46	chr15:58816000-58816400	Weak transcription	Placenta Amnion	Placenta Amnion
47	chr15:58816000-58820200	Enhancers	A549	lung

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