Variant report

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr12:117704757..117707127-chr12:117720324..117722231,2	MCF-7	breast:

rSNPs within LD-proxies of this variant (count:22)

rs_ID	r²[population]
rs11068433	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs12300042	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs41376150	1.00[AMR][1000 genomes]
rs57467298	1.00[AMR][1000 genomes]
rs59338775	1.00[AMR][1000 genomes]
rs59461295	1.00[AMR][1000 genomes]
rs61649589	1.00[AMR][1000 genomes]
rs73395922	1.00[AMR][1000 genomes]
rs73395927	1.00[AMR][1000 genomes]
rs73395945	1.00[AMR][1000 genomes]
rs73395955	1.00[AMR][1000 genomes]
rs73395964	1.00[AMR][1000 genomes]
rs73395966	1.00[AMR][1000 genomes]
rs73395976	1.00[AMR][1000 genomes]
rs73395979	1.00[AMR][1000 genomes]
rs73395994	1.00[AMR][1000 genomes]
rs73397517	1.00[AMR][1000 genomes]
rs73409551	1.00[AMR][1000 genomes]
rs73411417	1.00[AMR][1000 genomes]
rs73411437	1.00[AMR][1000 genomes]
rs7961096	1.00[MEX][hapmap]
rs9658372	1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv832526	chr12:117530234-117723821	Strong transcription Enhancers Active TSS Weak transcription Bivalent Enhancer Flanking Active TSS Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	14 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:11 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr12:117660000-117727400	Weak transcription	Psoas Muscle	Psoas
2	chr12:117697200-117746200	Weak transcription	Brain Anterior Caudate	brain
3	chr12:117714200-117728000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
4	chr12:117717800-117720800	Strong transcription	Skeletal Muscle Male	skeletal muscle
5	chr12:117718000-117722000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
6	chr12:117718800-117722400	Weak transcription	Skeletal Muscle Female	skeletal muscle
7	chr12:117718800-117726200	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
8	chr12:117718800-117726400	Weak transcription	H1 Cell Line	embryonic stem cell
9	chr12:117719200-117731800	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
10	chr12:117719600-117730800	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
11	chr12:117720000-117720800	Enhancers	NHEK	skin

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