Variant report

Variant	rs73411417
Chromosome Location	chr12:117794698-117794699
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 25 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:23)

rs_ID	r²[population]
rs11068433	1.00[AMR][1000 genomes]
rs12300042	1.00[AMR][1000 genomes]
rs16947411	1.00[AMR][1000 genomes]
rs41344546	0.82[AFR][1000 genomes]
rs41376150	1.00[AMR][1000 genomes]
rs57467298	1.00[AMR][1000 genomes]
rs59338775	1.00[AMR][1000 genomes]
rs59461295	1.00[AMR][1000 genomes]
rs61649589	1.00[AMR][1000 genomes]
rs73395922	1.00[AMR][1000 genomes]
rs73395927	1.00[AMR][1000 genomes]
rs73395945	1.00[AMR][1000 genomes]
rs73395955	1.00[AMR][1000 genomes]
rs73395964	1.00[AMR][1000 genomes]
rs73395966	1.00[AMR][1000 genomes]
rs73395976	1.00[AMR][1000 genomes]
rs73395979	1.00[AMR][1000 genomes]
rs73395994	1.00[AMR][1000 genomes]
rs73397517	1.00[AMR][1000 genomes]
rs73409541	0.90[AFR][1000 genomes]
rs73409551	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73411437	1.00[AMR][1000 genomes]
rs9658372	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv455724	chr12:117786105-117845806	Bivalent Enhancer Bivalent/Poised TSS Enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Weak transcription Active TSS Flanking Active TSS Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
2	nsv560385	chr12:117786105-117845806	Bivalent/Poised TSS Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Active TSS Genic enhancers Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr12:117782800-117796400	Weak transcription	Skeletal Muscle Female	skeletal muscle
2	chr12:117790000-117798000	Weak transcription	Psoas Muscle	Psoas
3	chr12:117793600-117794800	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
4	chr12:117794400-117794800	Genic enhancers	NHEK	skin

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links