Variant report

Variant	rs9658372
Chromosome Location	chr12:117716307-117716308
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 23 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:21)

rs_ID	r²[population]
rs11068433	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs12300042	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs16947411	1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs41376150	1.00[AMR][1000 genomes]
rs57467298	1.00[AMR][1000 genomes]
rs59338775	1.00[AMR][1000 genomes]
rs59461295	1.00[AMR][1000 genomes]
rs61649589	1.00[AMR][1000 genomes]
rs73395922	1.00[AMR][1000 genomes]
rs73395927	1.00[AMR][1000 genomes]
rs73395945	1.00[AMR][1000 genomes]
rs73395955	1.00[AMR][1000 genomes]
rs73395964	1.00[AMR][1000 genomes]
rs73395966	1.00[AMR][1000 genomes]
rs73395976	1.00[AMR][1000 genomes]
rs73395979	1.00[AMR][1000 genomes]
rs73395994	1.00[AMR][1000 genomes]
rs73397517	1.00[AMR][1000 genomes]
rs73409551	1.00[AMR][1000 genomes]
rs73411417	1.00[AMR][1000 genomes]
rs73411437	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv832526	chr12:117530234-117723821	Strong transcription Enhancers Active TSS Weak transcription Bivalent Enhancer Flanking Active TSS Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	14 gene(s)	inside rSNPs	diseases
2	nsv1051681	chr12:117692761-117720185	Enhancers Weak transcription Strong transcription Flanking Active TSS ZNF genes & repeats Genic enhancers Bivalent Enhancer	Chromatin interactive region	n/a	inside rSNPs	n/a

No data

Chromatin state (count:21 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr12:117660000-117727400	Weak transcription	Psoas Muscle	Psoas
2	chr12:117695600-117718200	Weak transcription	Pancreas	Pancrea
3	chr12:117697200-117746200	Weak transcription	Brain Anterior Caudate	brain
4	chr12:117703600-117717600	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
5	chr12:117710200-117717800	Weak transcription	Skeletal Muscle Female	skeletal muscle
6	chr12:117710600-117717800	Weak transcription	NHEK	skin
7	chr12:117714200-117728000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
8	chr12:117714800-117716600	Enhancers	iPS-18 Cell Line	embryonic stem cell
9	chr12:117714800-117716600	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
10	chr12:117715200-117717600	Weak transcription	Skeletal Muscle Male	skeletal muscle
11	chr12:117715400-117716600	Enhancers	HUES48 Cell Line	embryonic stem cell
12	chr12:117715400-117716600	Enhancers	iPS-15b Cell Line	embryonic stem cell
13	chr12:117715400-117716600	Enhancers	iPS-20b Cell Line	embryonic stem cell
14	chr12:117715800-117717600	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
15	chr12:117716000-117716400	Enhancers	HUES64 Cell Line	embryonic stem cell
16	chr12:117716000-117717200	Weak transcription	H1 Cell Line	embryonic stem cell
17	chr12:117716000-117717200	Weak transcription	HUES6 Cell Line	embryonic stem cell
18	chr12:117716200-117716600	Enhancers	H9 Cell Line	embryonic stem cell
19	chr12:117716200-117717200	Weak transcription	ES-I3 Cell Line	embryonic stem cell
20	chr12:117716200-117717200	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
21	chr12:117716200-117717400	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links