Variant report
| Variant | rs73395922 |
|---|---|
| Chromosome Location | chr12:117819400-117819401 |
| allele | C/T |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:1)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
(count:1 , 50 per page) page:
1
| No. | Distal block | Cell Line | Cell type | Cell Stage |
|---|---|---|---|---|
| 1 | chr12:117818425..117820449-chr12:117830526..117832304,2 | MCF-7 | breast: |
| No data |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:21)
| rs_ID | r2[population] |
|---|---|
| rs11068433 | 1.00[AMR][1000 genomes] |
| rs12300042 | 1.00[AMR][1000 genomes] |
| rs16947411 | 1.00[AMR][1000 genomes] |
| rs41376150 | 1.00[AMR][1000 genomes] |
| rs57467298 | 0.81[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs59338775 | 0.81[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs59461295 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs61649589 | 1.00[AMR][1000 genomes] |
| rs73395927 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs73395945 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs73395955 | 1.00[AMR][1000 genomes] |
| rs73395964 | 1.00[AMR][1000 genomes] |
| rs73395966 | 1.00[AMR][1000 genomes] |
| rs73395976 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs73395979 | 1.00[AMR][1000 genomes] |
| rs73395994 | 0.91[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs73397517 | 1.00[AMR][1000 genomes] |
| rs73409551 | 1.00[AMR][1000 genomes] |
| rs73411417 | 1.00[AMR][1000 genomes] |
| rs73411437 | 1.00[AMR][1000 genomes] |
| rs9658372 | 1.00[AMR][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv455724 | chr12:117786105-117845806 | Bivalent Enhancer Bivalent/Poised TSS Enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Weak transcription Active TSS Flanking Active TSS Strong transcription Genic enhancers | TF binding regionCpG islandChromatin interactive regionlncRNA | 1 gene(s) | inside rSNPs | diseases |
| 2 | nsv560385 | chr12:117786105-117845806 | Bivalent/Poised TSS Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Active TSS Genic enhancers Strong transcription | TF binding regionCpG islandChromatin interactive regionlncRNA | 1 gene(s) | inside rSNPs | diseases |
| No data |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr12:117815600-117822400 | Weak transcription | iPS DF 19.11 Cell Line | embryonic stem cell |
