Variant report

Variant	rs73411437
Chromosome Location	chr12:117804728-117804729
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:11)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

No data

(count:11 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr12:117804547..117805466-chr12:118109346..118110098,4	K562	blood:
2	chr12:117804563..117805437-chr12:118287494..118288332,2	K562	blood:
3	chr12:117804426..117805543-chr12:118109286..118110102,10	MCF-7	breast:
4	chr12:117803198..117804891-chr12:118275009..118276733,2	MCF-7	breast:
5	chr12:117804517..117805451-chr12:118024901..118026439,8	MCF-7	breast:
6	chr12:117804617..117805433-chr12:118274675..118275873,4	MCF-7	breast:
7	chr12:117804326..117804994-chr12:117910584..117911095,2	MCF-7	breast:
8	chr12:117804232..117805770-chr12:118025194..118026446,7	MCF-7	breast:
9	chr12:117650460..117651090-chr12:117804541..117805158,2	MCF-7	breast:
10	chr12:117804572..117805820-chr12:118274713..118275534,9	K562	blood:
11	chr12:117804727..117805650-chr12:118025231..118026126,6	K562	blood:

No data

No data

No data

Extended variants
information (count: 23 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:21)

rs_ID	r²[population]
rs11068433	1.00[AMR][1000 genomes]
rs12300042	1.00[AMR][1000 genomes]
rs16947411	1.00[AMR][1000 genomes]
rs41376150	1.00[AMR][1000 genomes]
rs57467298	1.00[AMR][1000 genomes]
rs59338775	1.00[AMR][1000 genomes]
rs59461295	1.00[AMR][1000 genomes]
rs61649589	1.00[AMR][1000 genomes]
rs73395922	1.00[AMR][1000 genomes]
rs73395927	1.00[AMR][1000 genomes]
rs73395945	1.00[AMR][1000 genomes]
rs73395955	1.00[AMR][1000 genomes]
rs73395964	1.00[AMR][1000 genomes]
rs73395966	1.00[AMR][1000 genomes]
rs73395976	1.00[AMR][1000 genomes]
rs73395979	1.00[AMR][1000 genomes]
rs73395994	1.00[AMR][1000 genomes]
rs73397517	1.00[AMR][1000 genomes]
rs73409551	1.00[AMR][1000 genomes]
rs73411417	1.00[AMR][1000 genomes]
rs9658372	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv455724	chr12:117786105-117845806	Bivalent Enhancer Bivalent/Poised TSS Enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Weak transcription Active TSS Flanking Active TSS Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
2	nsv560385	chr12:117786105-117845806	Bivalent/Poised TSS Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Active TSS Genic enhancers Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr12:117804400-117805400	Enhancers	Skeletal Muscle Female	skeletal muscle
2	chr12:117804600-117805400	Enhancers	Skeletal Muscle Male	skeletal muscle

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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