Variant report

Variant	rs16947779
Chromosome Location	chr13:93196912-93196913
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 22 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:16)

rs_ID	r²[population]
rs28723564	1.00[EUR][1000 genomes]
rs7330553	1.00[CEU][hapmap];0.86[LWK][hapmap];1.00[TSI][hapmap]
rs7983573	1.00[CEU][hapmap]
rs8000850	1.00[CEU][hapmap]
rs9301818	1.00[CEU][hapmap];1.00[EUR][1000 genomes]
rs9301820	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9584033	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[LWK][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];0.91[YRI][hapmap];0.86[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs9584035	1.00[CEU][hapmap];1.00[TSI][hapmap]
rs9584036	1.00[ASW][hapmap];1.00[LWK][hapmap];0.91[MKK][hapmap];1.00[TSI][hapmap];0.91[YRI][hapmap]
rs9584037	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[LWK][hapmap];0.91[MKK][hapmap];1.00[TSI][hapmap];0.91[YRI][hapmap]
rs9584038	1.00[CEU][hapmap]
rs9589568	1.00[CEU][hapmap];0.81[YRI][hapmap];1.00[EUR][1000 genomes]
rs9589569	0.86[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs9589571	1.00[CEU][hapmap];1.00[TSI][hapmap]
rs9589578	1.00[CEU][hapmap];0.91[YRI][hapmap]
rs9589584	1.00[ASW][hapmap];1.00[CEU][hapmap];0.89[LWK][hapmap];1.00[TSI][hapmap];0.91[YRI][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv471168	chr13:93138577-93208593	Enhancers Weak transcription Genic enhancers ZNF genes & repeats	TF binding region Chromatin interactive region lncRNA miRNA	1 gene(s)	inside rSNPs	diseases
2	nsv900904	chr13:93138577-93208593	Enhancers Weak transcription ZNF genes & repeats Genic enhancers	TF binding region Chromatin interactive region lncRNA miRNA	1 gene(s)	inside rSNPs	diseases
3	nsv900905	chr13:93138577-93211339	Enhancers Weak transcription Genic enhancers ZNF genes & repeats	TF binding region Chromatin interactive region lncRNA miRNA	1 gene(s)	inside rSNPs	diseases
4	nsv562728	chr13:93142706-93208593	Weak transcription Enhancers Genic enhancers ZNF genes & repeats	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
5	nsv456069	chr13:93161846-93204427	Enhancers Weak transcription ZNF genes & repeats Genic enhancers	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
6	nsv562729	chr13:93161846-93204427	Enhancers Weak transcription ZNF genes & repeats Genic enhancers	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases

No data

Chromatin state (count:0 , 50 per page) page:

No data

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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