Variant report
| Variant | rs7983573 |
|---|---|
| Chromosome Location | chr13:93215716-93215717 |
| allele | A/C/G/T |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:4)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
(count:4 , 50 per page) page:
1
| No. | Distal block | Cell Line | Cell type | Cell Stage |
|---|---|---|---|---|
| 1 | chr13:93213538..93215763-chr13:93218010..93219710,2 | K562 | blood: | |
| 2 | chr13:93208924..93213001-chr13:93215158..93217027,3 | K562 | blood: | |
| 3 | chr13:93212861..93215246-chr13:93215682..93217873,2 | K562 | blood: | |
| 4 | chr13:93082498..93084409-chr13:93214382..93216049,2 | K562 | blood: |
| No data |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:15)
| rs_ID | r2[population] |
|---|---|
| rs16947779 | 1.00[CEU][hapmap] |
| rs28723564 | 1.00[EUR][1000 genomes] |
| rs7330553 | 1.00[CEU][hapmap] |
| rs8000850 | 1.00[CEU][hapmap];1.00[YRI][hapmap] |
| rs9301818 | 1.00[CEU][hapmap];1.00[EUR][1000 genomes] |
| rs9301820 | 1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs9584033 | 1.00[CEU][hapmap];1.00[EUR][1000 genomes] |
| rs9584035 | 1.00[CEU][hapmap] |
| rs9584037 | 1.00[CEU][hapmap] |
| rs9584038 | 1.00[CEU][hapmap] |
| rs9589568 | 1.00[CEU][hapmap];1.00[EUR][1000 genomes] |
| rs9589569 | 1.00[EUR][1000 genomes] |
| rs9589571 | 1.00[CEU][hapmap] |
| rs9589578 | 1.00[CEU][hapmap] |
| rs9589584 | 1.00[CEU][hapmap];0.83[AMR][1000 genomes];1.00[EUR][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv456070 | chr13:93208593-93298523 | Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats | Chromatin interactive region | n/a | inside rSNPs | diseases |
| 2 | nsv562730 | chr13:93208593-93298523 | Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats | Chromatin interactive region | n/a | inside rSNPs | diseases |
| No data |
Chromatin state (count:0 , 50 per page) page:
| No data |
