Variant report
| Variant | rs9584035 |
|---|---|
| Chromosome Location | chr13:93177754-93177755 |
| allele | A/C |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:1)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
(count:1 , 50 per page) page:
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| No. | Distal block | Cell Line | Cell type | Cell Stage |
|---|---|---|---|---|
| 1 | chr13:93175770..93178293-chr13:93185133..93187097,2 | K562 | blood: |
| No data |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:21)
| rs_ID | r2[population] |
|---|---|
| rs1572106 | 0.94[YRI][hapmap] |
| rs16947779 | 1.00[CEU][hapmap];1.00[TSI][hapmap] |
| rs28723564 | 0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs7322982 | 1.00[MEX][hapmap] |
| rs7330553 | 1.00[CEU][hapmap];1.00[TSI][hapmap] |
| rs7983573 | 1.00[CEU][hapmap] |
| rs7993263 | 0.84[YRI][hapmap];0.84[AFR][1000 genomes] |
| rs8000850 | 1.00[CEU][hapmap] |
| rs9301818 | 1.00[ASW][hapmap];1.00[CEU][hapmap];0.92[MKK][hapmap];0.95[YRI][hapmap];0.89[AFR][1000 genomes];1.00[EUR][1000 genomes] |
| rs9301820 | 1.00[EUR][1000 genomes] |
| rs9584033 | 1.00[CEU][hapmap];1.00[TSI][hapmap];1.00[EUR][1000 genomes] |
| rs9584036 | 1.00[TSI][hapmap] |
| rs9584037 | 1.00[CEU][hapmap];1.00[TSI][hapmap] |
| rs9584038 | 1.00[CEU][hapmap];0.95[YRI][hapmap] |
| rs9589564 | 0.87[ASW][hapmap];0.94[LWK][hapmap];0.90[YRI][hapmap];0.82[AFR][1000 genomes] |
| rs9589566 | 0.90[YRI][hapmap];0.82[AFR][1000 genomes] |
| rs9589568 | 1.00[CEU][hapmap];1.00[EUR][1000 genomes] |
| rs9589569 | 1.00[EUR][1000 genomes] |
| rs9589571 | 0.88[ASW][hapmap];1.00[CEU][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];0.82[YRI][hapmap] |
| rs9589578 | 1.00[CEU][hapmap] |
| rs9589584 | 1.00[CEU][hapmap];1.00[TSI][hapmap];1.00[EUR][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv832680 | chr13:93021114-93181489 | Enhancers Weak transcription Active TSS ZNF genes & repeats Bivalent Enhancer Genic enhancers | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA | 3 gene(s) | inside rSNPs | diseases |
| 2 | nsv471168 | chr13:93138577-93208593 | Enhancers Weak transcription Genic enhancers ZNF genes & repeats | TF binding regionChromatin interactive regionlncRNAmiRNA | 1 gene(s) | inside rSNPs | diseases |
| 3 | nsv900904 | chr13:93138577-93208593 | Enhancers Weak transcription ZNF genes & repeats Genic enhancers | TF binding regionChromatin interactive regionlncRNAmiRNA | 1 gene(s) | inside rSNPs | diseases |
| 4 | nsv900905 | chr13:93138577-93211339 | Enhancers Weak transcription Genic enhancers ZNF genes & repeats | TF binding regionChromatin interactive regionlncRNAmiRNA | 1 gene(s) | inside rSNPs | diseases |
| 5 | nsv562728 | chr13:93142706-93208593 | Weak transcription Enhancers Genic enhancers ZNF genes & repeats | Chromatin interactive regionlncRNA | 1 gene(s) | inside rSNPs | diseases |
| 6 | nsv456069 | chr13:93161846-93204427 | Enhancers Weak transcription ZNF genes & repeats Genic enhancers | Chromatin interactive regionlncRNA | n/a | inside rSNPs | diseases |
| 7 | nsv562729 | chr13:93161846-93204427 | Enhancers Weak transcription ZNF genes & repeats Genic enhancers | Chromatin interactive regionlncRNA | n/a | inside rSNPs | diseases |
| No data |
Chromatin state (count:0 , 50 per page) page:
| No data |
