Variant report
| Variant | rs9589584 |
|---|---|
| Chromosome Location | chr13:93232301-93232302 |
| allele | A/G |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:1)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
(count:1 , 50 per page) page:
1
| No. | Distal block | Cell Line | Cell type | Cell Stage |
|---|---|---|---|---|
| 1 | chr13:93187246..93189629-chr13:93231804..93233615,2 | K562 | blood: |
| No data |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:16)
| rs_ID | r2[population] |
|---|---|
| rs16947779 | 1.00[ASW][hapmap];1.00[CEU][hapmap];0.89[LWK][hapmap];1.00[TSI][hapmap];0.91[YRI][hapmap] |
| rs28723564 | 1.00[EUR][1000 genomes] |
| rs7330553 | 1.00[CEU][hapmap];0.84[MKK][hapmap];1.00[TSI][hapmap] |
| rs7983573 | 1.00[CEU][hapmap] |
| rs8000850 | 1.00[CEU][hapmap] |
| rs9301818 | 1.00[CEU][hapmap];1.00[EUR][1000 genomes] |
| rs9301820 | 0.83[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs9584033 | 1.00[ASW][hapmap];1.00[CEU][hapmap];0.89[LWK][hapmap];1.00[TSI][hapmap];0.82[YRI][hapmap];1.00[EUR][1000 genomes] |
| rs9584035 | 1.00[CEU][hapmap];1.00[TSI][hapmap] |
| rs9584036 | 1.00[ASW][hapmap];0.89[LWK][hapmap];1.00[TSI][hapmap];0.82[YRI][hapmap] |
| rs9584037 | 1.00[ASW][hapmap];1.00[CEU][hapmap];0.89[LWK][hapmap];1.00[TSI][hapmap];0.82[YRI][hapmap] |
| rs9584038 | 1.00[CEU][hapmap] |
| rs9589568 | 1.00[CEU][hapmap];1.00[EUR][1000 genomes] |
| rs9589569 | 1.00[EUR][1000 genomes] |
| rs9589571 | 1.00[CEU][hapmap];1.00[TSI][hapmap] |
| rs9589578 | 1.00[CEU][hapmap];1.00[YRI][hapmap] |
Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv456070 | chr13:93208593-93298523 | Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats | Chromatin interactive region | n/a | inside rSNPs | diseases |
| 2 | nsv562730 | chr13:93208593-93298523 | Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats | Chromatin interactive region | n/a | inside rSNPs | diseases |
| 3 | esv1808762 | chr13:93232301-93241744 | Weak transcription | Chromatin interactive region | n/a | inside rSNPs | n/a |
| 4 | esv1842146 | chr13:93232301-93241744 | Weak transcription | Chromatin interactive region | n/a | inside rSNPs | n/a |
| No data |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr13:93226200-93235600 | Weak transcription | Right Atrium | heart |
