Variant report

Variant	rs16961405
Chromosome Location	chr18:28764632-28764633
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 15 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:14)

rs_ID	r²[population]
rs16961378	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs16961401	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs16961567	1.00[AMR][1000 genomes]
rs16961569	1.00[AMR][1000 genomes]
rs16961578	1.00[AMR][1000 genomes]
rs16961580	1.00[AMR][1000 genomes]
rs16961581	1.00[AMR][1000 genomes]
rs16961583	1.00[AMR][1000 genomes]
rs28617457	1.00[AMR][1000 genomes]
rs41395654	1.00[AMR][1000 genomes]
rs61730308	1.00[AMR][1000 genomes]
rs61730309	1.00[AMR][1000 genomes]
rs7229713	1.00[AMR][1000 genomes]
rs8086349	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3360998	chr18:28693111-28881812	Enhancers ZNF genes & repeats Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer Strong transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr18:28764400-28764800	Weak transcription	HepG2	liver
2	chr18:28764400-28767000	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
3	chr18:28764400-28771000	Weak transcription	HUES6 Cell Line	embryonic stem cell

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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