Variant report

Variant	rs16961567
Chromosome Location	chr18:28841966-28841967
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 18 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:17)

rs_ID	r²[population]
rs16961378	1.00[AMR][1000 genomes]
rs16961401	1.00[AMR][1000 genomes]
rs16961405	1.00[AMR][1000 genomes]
rs16961569	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs16961578	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs16961580	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs16961581	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs16961583	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs28617457	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs41395654	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs61730308	1.00[AMR][1000 genomes]
rs61730309	1.00[AMR][1000 genomes]
rs62095180	1.00[AMR][1000 genomes]
rs7229713	1.00[AMR][1000 genomes]
rs73953164	1.00[AMR][1000 genomes]
rs73953166	1.00[AMR][1000 genomes]
rs8086349	1.00[YRI][hapmap];0.87[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3360998	chr18:28693111-28881812	Enhancers ZNF genes & repeats Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer Strong transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:23 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr18:28837200-28845400	Weak transcription	Liver	Liver
2	chr18:28840200-28842000	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
3	chr18:28840400-28842000	Enhancers	iPS-18 Cell Line	embryonic stem cell
4	chr18:28840600-28842200	Enhancers	HUES6 Cell Line	embryonic stem cell
5	chr18:28840600-28842800	Weak transcription	Stomach Mucosa	stomach
6	chr18:28841200-28842000	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
7	chr18:28841200-28842200	Enhancers	GM12878-XiMat	blood
8	chr18:28841400-28842000	Enhancers	ES-I3 Cell Line	embryonic stem cell
9	chr18:28841400-28842000	Enhancers	HUES48 Cell Line	embryonic stem cell
10	chr18:28841400-28842000	Enhancers	iPS-20b Cell Line	embryonic stem cell
11	chr18:28841400-28842200	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
12	chr18:28841400-28844000	Enhancers	Fetal Intestine Small	intestine
13	chr18:28841600-28842000	Enhancers	H1 Cell Line	embryonic stem cell
14	chr18:28841600-28842000	Enhancers	Placenta	Placenta
15	chr18:28841600-28842200	Enhancers	Fetal Heart	heart
16	chr18:28841600-28842400	Enhancers	HepG2	liver
17	chr18:28841600-28844600	Enhancers	Fetal Intestine Large	intestine
18	chr18:28841800-28842000	Enhancers	Left Ventricle	heart
19	chr18:28841800-28842200	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
20	chr18:28841800-28842200	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
21	chr18:28841800-28842200	Active TSS	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
22	chr18:28841800-28842400	Enhancers	Duodenum Mucosa	Duodenum
23	chr18:28841800-28843000	Enhancers	Pancreas	Pancrea

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