Variant report

Variant	rs8086349
Chromosome Location	chr18:28823807-28823808
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr18:28680633..28683180-chr18:28821248..28824915,4	MCF-7	breast:

Variant related genes	Relation type
ENSG00000265888	Chromatin interaction
ENSG00000134755	Chromatin interaction

Extended variants
information (count: 16 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:15)

rs_ID	r²[population]
rs16961378	1.00[AMR][1000 genomes]
rs16961401	1.00[AMR][1000 genomes]
rs16961405	1.00[AMR][1000 genomes]
rs16961567	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs16961569	1.00[AMR][1000 genomes]
rs16961578	1.00[AMR][1000 genomes]
rs16961580	1.00[AMR][1000 genomes]
rs16961581	1.00[AMR][1000 genomes]
rs16961583	1.00[AMR][1000 genomes]
rs28617457	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs41395654	1.00[AMR][1000 genomes]
rs61730308	1.00[AMR][1000 genomes]
rs61730309	1.00[AMR][1000 genomes]
rs62095180	1.00[AMR][1000 genomes]
rs7229713	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3360998	chr18:28693111-28881812	Enhancers ZNF genes & repeats Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer Strong transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:54 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr18:28820200-28826000	Enhancers	Breast Myoepithelial Primary Cells	Breast
2	chr18:28820400-28824800	Enhancers	HMEC	breast
3	chr18:28820600-28824600	Enhancers	Fetal Intestine Large	intestine
4	chr18:28820600-28824600	Enhancers	Fetal Intestine Small	intestine
5	chr18:28820600-28828000	Enhancers	HUES6 Cell Line	embryonic stem cell
6	chr18:28820800-28826200	Enhancers	HUES64 Cell Line	embryonic stem cell
7	chr18:28821200-28824800	Enhancers	Stomach Mucosa	stomach
8	chr18:28821200-28826000	Enhancers	ES-I3 Cell Line	embryonic stem cell
9	chr18:28821400-28824800	Enhancers	Fetal Kidney	kidney
10	chr18:28821400-28825200	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
11	chr18:28822000-28824000	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
12	chr18:28822200-28824400	Weak transcription	NH-A	brain
13	chr18:28822200-28824600	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
14	chr18:28822200-28826800	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
15	chr18:28822400-28824000	Enhancers	A549	lung
16	chr18:28822400-28824600	Enhancers	Rectal Mucosa Donor 31	rectum
17	chr18:28822600-28824600	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
18	chr18:28822800-28824200	Weak transcription	Fetal Lung	lung
19	chr18:28822800-28824600	Weak transcription	Pancreatic Islets	Pancreatic Islet
20	chr18:28823000-28824000	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
21	chr18:28823200-28826000	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
22	chr18:28823600-28824200	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
23	chr18:28823600-28824600	Enhancers	GM12878-XiMat	blood
24	chr18:28823600-28824800	Enhancers	Left Ventricle	heart
25	chr18:28823600-28825000	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
26	chr18:28823600-28825000	Enhancers	Fetal Adrenal Gland	Adrenal Gland
27	chr18:28823600-28825200	Enhancers	H1 Cell Line	embryonic stem cell
28	chr18:28823600-28825400	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
29	chr18:28823600-28825400	Enhancers	iPS-18 Cell Line	embryonic stem cell
30	chr18:28823600-28825400	Enhancers	Placenta Amnion	Placenta Amnion
31	chr18:28823600-28825800	Enhancers	HUES48 Cell Line	embryonic stem cell
32	chr18:28823800-28824000	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
33	chr18:28823800-28824000	Flanking Active TSS	Duodenum Mucosa	Duodenum
34	chr18:28823800-28824000	Enhancers	Esophagus	oesophagus
35	chr18:28823800-28824000	Enhancers	Small Intestine	intestine
36	chr18:28823800-28824200	Enhancers	Duodenum Smooth Muscle	Duodenum
37	chr18:28823800-28824200	Enhancers	Pancreas	Pancrea
38	chr18:28823800-28824200	Flanking Active TSS	HUVEC	blood vessel
39	chr18:28823800-28824400	Flanking Active TSS	Rectal Mucosa Donor 29	rectum
40	chr18:28823800-28824600	Enhancers	Colonic Mucosa	Colon
41	chr18:28823800-28824600	Enhancers	Colon Smooth Muscle	Colon
42	chr18:28823800-28824600	Enhancers	Placenta	Placenta
43	chr18:28823800-28824600	Enhancers	Sigmoid Colon	Sigmoid Colon
44	chr18:28823800-28824800	Enhancers	Gastric	stomach
45	chr18:28823800-28824800	Enhancers	Right Atrium	heart
46	chr18:28823800-28824800	Enhancers	Hela-S3	cervix
47	chr18:28823800-28824800	Flanking Active TSS	HepG2	liver
48	chr18:28823800-28825200	Enhancers	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
49	chr18:28823800-28825200	Enhancers	H9 Cell Line	embryonic stem cell
50	chr18:28823800-28825200	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell

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