Variant report

Variant	rs7229713
Chromosome Location	chr18:28830394-28830395
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 16 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:15)

rs_ID	r²[population]
rs16961378	1.00[AMR][1000 genomes]
rs16961401	1.00[AMR][1000 genomes]
rs16961405	1.00[AMR][1000 genomes]
rs16961567	1.00[AMR][1000 genomes]
rs16961569	1.00[AMR][1000 genomes]
rs16961578	1.00[AMR][1000 genomes]
rs16961580	1.00[AMR][1000 genomes]
rs16961581	1.00[AMR][1000 genomes]
rs16961583	1.00[AMR][1000 genomes]
rs28617457	1.00[AMR][1000 genomes]
rs41395654	1.00[AMR][1000 genomes]
rs61730308	1.00[AMR][1000 genomes]
rs61730309	1.00[AMR][1000 genomes]
rs62095180	1.00[AMR][1000 genomes]
rs8086349	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3360998	chr18:28693111-28881812	Enhancers ZNF genes & repeats Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer Strong transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:17 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr18:28825200-28835400	Weak transcription	Right Atrium	heart
2	chr18:28826000-28831000	Weak transcription	Breast Myoepithelial Primary Cells	Breast
3	chr18:28827000-28841400	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
4	chr18:28827600-28831600	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
5	chr18:28827800-28832400	Weak transcription	ES-I3 Cell Line	embryonic stem cell
6	chr18:28827800-28835400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
7	chr18:28828000-28830400	Weak transcription	A549	lung
8	chr18:28828000-28835600	Weak transcription	GM12878-XiMat	blood
9	chr18:28828000-28841400	Weak transcription	Placenta Amnion	Placenta Amnion
10	chr18:28828200-28830800	Weak transcription	Liver	Liver
11	chr18:28829000-28831200	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
12	chr18:28829200-28831600	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
13	chr18:28829600-28831600	Enhancers	NHEK	skin
14	chr18:28830000-28835200	Weak transcription	HMEC	breast
15	chr18:28830200-28830400	Enhancers	HUES64 Cell Line	embryonic stem cell
16	chr18:28830200-28830400	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
17	chr18:28830200-28830400	Enhancers	Left Ventricle	heart

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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