Variant report

Variant	rs16961583
Chromosome Location	chr18:28848094-28848095
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 19 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:18)

rs_ID	r²[population]
rs16961378	1.00[AMR][1000 genomes]
rs16961401	1.00[AMR][1000 genomes]
rs16961405	1.00[AMR][1000 genomes]
rs16961567	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs16961569	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs16961578	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs16961580	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs16961581	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs28617457	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs41395654	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs60846965	1.00[AMR][1000 genomes]
rs61730308	1.00[AMR][1000 genomes]
rs61730309	1.00[AMR][1000 genomes]
rs62095180	1.00[AMR][1000 genomes]
rs7229713	1.00[AMR][1000 genomes]
rs73953164	1.00[AMR][1000 genomes]
rs73953166	1.00[AMR][1000 genomes]
rs8086349	1.00[YRI][hapmap];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3360998	chr18:28693111-28881812	Enhancers ZNF genes & repeats Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer Strong transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:12 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr18:28842400-28849000	Weak transcription	HepG2	liver
2	chr18:28842600-28849200	Weak transcription	Fetal Kidney	kidney
3	chr18:28845800-28848800	Weak transcription	Liver	Liver
4	chr18:28847600-28850400	Enhancers	Fetal Intestine Small	intestine
5	chr18:28847800-28848200	Enhancers	iPS-18 Cell Line	embryonic stem cell
6	chr18:28847800-28848200	Flanking Active TSS	GM12878-XiMat	blood
7	chr18:28847800-28849200	Enhancers	Stomach Mucosa	stomach
8	chr18:28847800-28849600	Enhancers	Breast Myoepithelial Primary Cells	Breast
9	chr18:28847800-28850800	Enhancers	Fetal Intestine Large	intestine
10	chr18:28848000-28849400	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
11	chr18:28848000-28849400	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
12	chr18:28848000-28849800	Enhancers	NHEK	skin

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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