Variant report

Variant	rs16971042
Chromosome Location	chr19:36869771-36869772
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr19:36869355..36872280-chr19:37261242..37264152,2	MCF-7	breast:
2	chr19:36867523..36870095-chr19:37064121..37065626,2	MCF-7	breast:
3	chr19:36869703..36871321-chr19:37018127..37020542,2	K562	blood:
4	chr19:36868756..36870628-chr19:37018916..37021157,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000186020	Chromatin interaction
ENSG00000254004	Chromatin interaction
ENSG00000233527	Chromatin interaction
ENSG00000267041	Chromatin interaction
ENSG00000267260	Chromatin interaction
ENSG00000228629	Chromatin interaction

Extended variants
information (count: 21 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:20)

rs_ID	r²[population]
rs16971046	1.00[ASW][hapmap];0.89[LWK][hapmap];1.00[MEX][hapmap];0.91[MKK][hapmap];0.87[YRI][hapmap];0.92[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs17464619	0.93[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs2385798	1.00[ASW][hapmap];0.89[LWK][hapmap];1.00[MEX][hapmap];0.91[MKK][hapmap];0.87[YRI][hapmap];0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs2891870	1.00[ASW][hapmap];0.89[LWK][hapmap];1.00[MEX][hapmap];0.91[MKK][hapmap];0.87[YRI][hapmap];0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs56854596	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs57085758	0.83[AFR][1000 genomes]
rs59953432	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs60043543	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7254161	1.00[ASW][hapmap];0.84[LWK][hapmap];1.00[MEX][hapmap];0.91[MKK][hapmap];0.87[YRI][hapmap];0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73602361	0.88[AFR][1000 genomes]
rs73602365	0.88[AFR][1000 genomes]
rs73602375	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73606471	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73606491	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73608310	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73608312	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73608349	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73608364	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73608381	0.91[AFR][1000 genomes]
rs73614529	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv833816	chr19:36824257-37034287	ZNF genes & repeats Active TSS Weak transcription Enhancers Flanking Active TSS Strong transcription Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	29 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:127 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr19:36868600-36869800	Flanking Active TSS	Dnd41	blood
2	chr19:36868600-36870800	Active TSS	Foreskin Fibroblast Primary Cells skin01	Skin
3	chr19:36868800-36869800	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Female	--
4	chr19:36868800-36869800	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Male	--
5	chr19:36868800-36869800	Flanking Active TSS	Monocytes-CD14+_RO01746	blood
6	chr19:36868800-36870000	Active TSS	Foreskin Fibroblast Primary Cells skin02	Skin
7	chr19:36868800-36870200	Active TSS	Fetal Muscle Trunk	muscle
8	chr19:36868800-36870400	Active TSS	NHLF	lung
9	chr19:36868800-36870600	Active TSS	H1 Cell Line	embryonic stem cell
10	chr19:36868800-36870600	Active TSS	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
11	chr19:36868800-36870600	Active TSS	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
12	chr19:36868800-36870600	Active TSS	iPS-20b Cell Line	embryonic stem cell
13	chr19:36868800-36870600	Active TSS	NHDF-Ad	bronchial
14	chr19:36868800-36870800	Active TSS	iPS-15b Cell Line	embryonic stem cell
15	chr19:36869000-36869800	Flanking Active TSS	Primary B cells from cord blood	blood
16	chr19:36869000-36869800	Flanking Active TSS	Primary hematopoietic stem cells	blood
17	chr19:36869000-36869800	Flanking Active TSS	Primary T helper cells fromperipheralblood	blood
18	chr19:36869000-36869800	Flanking Active TSS	Adipose Nuclei	Adipose
19	chr19:36869000-36870200	Active TSS	Brain Germinal Matrix	brain
20	chr19:36869000-36870200	Active TSS	Fetal Thymus	thymus
21	chr19:36869000-36870400	Active TSS	IMR90 fetal lung fibroblasts Cell Line	lung
22	chr19:36869000-36870400	Active TSS	Foreskin Melanocyte Primary Cells skin03	Skin
23	chr19:36869000-36870400	Active TSS	Fetal Intestine Large	intestine
24	chr19:36869000-36870400	Active TSS	Fetal Intestine Small	intestine
25	chr19:36869000-36870400	Active TSS	HSMMtube	muscle
26	chr19:36869000-36870400	Active TSS	K562	blood
27	chr19:36869000-36870600	Active TSS	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
28	chr19:36869000-36870600	Active TSS	Colonic Mucosa	Colon
29	chr19:36869000-36870600	Active TSS	Pancreatic Islets	Pancreatic Islet
30	chr19:36869000-36870600	Active TSS	Placenta Amnion	Placenta Amnion
31	chr19:36869000-36870800	Active TSS	HUES6 Cell Line	embryonic stem cell
32	chr19:36869000-36870800	Active TSS	Foreskin Keratinocyte Primary Cells skin02	Skin
33	chr19:36869200-36869800	Flanking Active TSS	Primary B cells from peripheral blood	blood
34	chr19:36869200-36869800	Flanking Active TSS	Primary T cells fromperipheralblood	blood
35	chr19:36869200-36869800	Flanking Active TSS	Primary T helper 17 cells PMA-I stimulated	--
36	chr19:36869200-36869800	Flanking Active TSS	Primary T regulatory cells fromperipheralblood	blood
37	chr19:36869200-36869800	Flanking Active TSS	Primary T killer naive cells fromperipheralblood	blood
38	chr19:36869200-36870200	Active TSS	HMEC	breast
39	chr19:36869200-36870400	Active TSS	Aorta	Aorta
40	chr19:36869200-36870400	Active TSS	Fetal Muscle Leg	muscle
41	chr19:36869200-36870400	Active TSS	Pancreas	Pancrea
42	chr19:36869200-36870400	Active TSS	Stomach Mucosa	stomach
43	chr19:36869200-36870600	Active TSS	ES-I3 Cell Line	embryonic stem cell
44	chr19:36869200-36870600	Active TSS	ES-WA7 Cell Line	embryonic stem cell
45	chr19:36869200-36870600	Active TSS	H9 Derived Neuron Cultured Cells	ES cell derived
46	chr19:36869200-36870600	Active TSS	HUES48 Cell Line	embryonic stem cell
47	chr19:36869200-36870600	Active TSS	iPS DF 6.9 Cell Line	embryonic stem cell
48	chr19:36869200-36870600	Active TSS	ES-UCSF4 Cell Line	embryonic stem cell
49	chr19:36869200-36870600	Active TSS	Placenta	Placenta
50	chr19:36869200-36870600	Active TSS	Ovary	ovary

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links