Variant report

Variant	rs73614529
Chromosome Location	chr19:36911146-36911147
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	FOXA1	chr19:36910769-36911158	HepG2	liver:	n/a	n/a

Variant related genes	Relation type
ENSG00000267142	TF binding region
ZFP82	TF binding region

Extended variants
information (count: 23 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:19)

rs_ID	r²[population]
rs16971042	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs16971046	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs17464619	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs2385798	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs2891870	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs56854596	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs59953432	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs60043543	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7254161	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73602361	0.83[AFR][1000 genomes]
rs73602365	0.83[AFR][1000 genomes]
rs73602375	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73606471	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73606491	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73608310	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73608312	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73608349	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73608364	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73608381	0.97[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv833816	chr19:36824257-37034287	ZNF genes & repeats Active TSS Weak transcription Enhancers Flanking Active TSS Strong transcription Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	29 gene(s)	inside rSNPs	diseases
2	nsv1066026	chr19:36878441-36947928	ZNF genes & repeats Active TSS Weak transcription Transcr. at gene 5' and 3' Strong transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh Flanking Active TSS Enhancers Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region	6 gene(s)	inside rSNPs	diseases
3	nsv1067101	chr19:36901010-36956251	ZNF genes & repeats Active TSS Weak transcription Strong transcription Bivalent/Poised TSS Flanking Active TSS Enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region	6 gene(s)	inside rSNPs	diseases
4	nsv1064851	chr19:36910259-37689721	Weak transcription ZNF genes & repeats Flanking Active TSS Strong transcription Enhancers Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	62 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:49 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr19:36909800-36912000	Weak transcription	Spleen	Spleen
2	chr19:36910000-36912000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
3	chr19:36910000-36912000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
4	chr19:36910000-36912000	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
5	chr19:36910000-36912000	Weak transcription	Pancreatic Islets	Pancreatic Islet
6	chr19:36910000-36912000	Weak transcription	Gastric	stomach
7	chr19:36910000-36912000	Weak transcription	Lung	lung
8	chr19:36910000-36912000	Weak transcription	Placenta Amnion	Placenta Amnion
9	chr19:36910000-36912000	Weak transcription	Psoas Muscle	Psoas
10	chr19:36910000-36912000	Weak transcription	Right Atrium	heart
11	chr19:36910000-36912000	Weak transcription	Right Ventricle	heart
12	chr19:36910000-36912000	Weak transcription	Sigmoid Colon	Sigmoid Colon
13	chr19:36910000-36912000	Weak transcription	HUVEC	blood vessel
14	chr19:36910000-36912200	Weak transcription	Cortex derived primary cultured neurospheres	brain
15	chr19:36910000-36912200	Weak transcription	Aorta	Aorta
16	chr19:36910000-36912200	Weak transcription	Colonic Mucosa	Colon
17	chr19:36910000-36912200	Weak transcription	Left Ventricle	heart
18	chr19:36910000-36912200	Weak transcription	Ovary	ovary
19	chr19:36910000-36912200	Weak transcription	Pancreas	Pancrea
20	chr19:36910000-36912400	Weak transcription	Esophagus	oesophagus
21	chr19:36910200-36911600	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
22	chr19:36910200-36911800	Weak transcription	Brain Inferior Temporal Lobe	brain
23	chr19:36910200-36912000	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
24	chr19:36910200-36912000	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
25	chr19:36910200-36912000	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
26	chr19:36910200-36912000	Weak transcription	Brain Angular Gyrus	brain
27	chr19:36910200-36912000	Weak transcription	Brain Anterior Caudate	brain
28	chr19:36910200-36912000	Weak transcription	Brain Cingulate Gyrus	brain
29	chr19:36910200-36912000	Weak transcription	Brain Hippocampus Middle	brain
30	chr19:36910200-36912000	Weak transcription	Brain Substantia Nigra	brain
31	chr19:36910200-36912000	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
32	chr19:36910200-36912000	Weak transcription	Fetal Muscle Trunk	muscle
33	chr19:36910200-36912000	Weak transcription	Placenta	Placenta
34	chr19:36910200-36912000	Weak transcription	Rectal Smooth Muscle	rectum
35	chr19:36910200-36912000	Weak transcription	Osteobl	bone
36	chr19:36910200-36912200	Weak transcription	Muscle Satellite Cultured Cells	--
37	chr19:36910200-36912200	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
38	chr19:36910200-36912200	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
39	chr19:36910200-36912200	Weak transcription	HSMMtube	muscle
40	chr19:36910200-36912200	Weak transcription	NHDF-Ad	bronchial
41	chr19:36910200-36912200	Weak transcription	NHLF	lung
42	chr19:36910200-36912400	Weak transcription	Colon Smooth Muscle	Colon
43	chr19:36910200-36912400	Weak transcription	Rectal Mucosa Donor 31	rectum
44	chr19:36910400-36911400	Weak transcription	Fetal Heart	heart
45	chr19:36910400-36911800	Weak transcription	Adipose Nuclei	Adipose
46	chr19:36910400-36912000	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
47	chr19:36910400-36912000	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
48	chr19:36910400-36912000	Weak transcription	Primary B cells from peripheral blood	blood
49	chr19:36910400-36912200	Weak transcription	Stomach Smooth Muscle	stomach

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