Variant report

Variant	rs17464619
Chromosome Location	chr19:36888444-36888445
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 22 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:20)

rs_ID	r²[population]
rs16971042	0.93[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs16971046	0.81[YRI][hapmap];0.92[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs2385798	0.81[YRI][hapmap];0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs2891870	0.81[YRI][hapmap];0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs56854596	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs57085758	0.83[AFR][1000 genomes]
rs59953432	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs60043543	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7254161	0.81[YRI][hapmap];0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73602361	0.88[AFR][1000 genomes]
rs73602365	0.88[AFR][1000 genomes]
rs73602375	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73606471	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73606491	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73608310	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73608312	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73608349	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73608364	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73608381	0.91[AFR][1000 genomes]
rs73614529	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv833816	chr19:36824257-37034287	ZNF genes & repeats Active TSS Weak transcription Enhancers Flanking Active TSS Strong transcription Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	29 gene(s)	inside rSNPs	diseases
2	nsv1066026	chr19:36878441-36947928	ZNF genes & repeats Active TSS Weak transcription Transcr. at gene 5' and 3' Strong transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh Flanking Active TSS Enhancers Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:99 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr19:36880400-36892800	ZNF genes & repeats	Liver	Liver
2	chr19:36880400-36893200	ZNF genes & repeats	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
3	chr19:36880400-36904600	ZNF genes & repeats	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
4	chr19:36880600-36889000	ZNF genes & repeats	Cortex derived primary cultured neurospheres	brain
5	chr19:36880600-36893000	ZNF genes & repeats	Primary T helper naive cells fromperipheralblood	blood
6	chr19:36880600-36893200	ZNF genes & repeats	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
7	chr19:36881400-36892800	ZNF genes & repeats	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
8	chr19:36882000-36891800	ZNF genes & repeats	HUES48 Cell Line	embryonic stem cell
9	chr19:36882200-36888800	ZNF genes & repeats	H1 Cell Line	embryonic stem cell
10	chr19:36882200-36890400	ZNF genes & repeats	HUES64 Cell Line	embryonic stem cell
11	chr19:36882200-36892800	ZNF genes & repeats	Primary hematopoietic stem cells short term culture	blood
12	chr19:36882200-36908800	ZNF genes & repeats	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
13	chr19:36882400-36888800	ZNF genes & repeats	Left Ventricle	heart
14	chr19:36882400-36890600	ZNF genes & repeats	IMR90 fetal lung fibroblasts Cell Line	lung
15	chr19:36882400-36892000	ZNF genes & repeats	Fetal Brain Female	brain
16	chr19:36882400-36892800	ZNF genes & repeats	H9 Derived Neuron Cultured Cells	ES cell derived
17	chr19:36882400-36896600	ZNF genes & repeats	H1 Derived Mesenchymal Stem Cells	ES cell derived
18	chr19:36882400-36907600	ZNF genes & repeats	Primary hematopoietic stem cells G-CSF-mobilized Male	--
19	chr19:36882600-36888600	ZNF genes & repeats	Foreskin Keratinocyte Primary Cells skin03	Skin
20	chr19:36882600-36888800	ZNF genes & repeats	Fetal Adrenal Gland	Adrenal Gland
21	chr19:36882600-36888800	ZNF genes & repeats	Fetal Muscle Leg	muscle
22	chr19:36882600-36889600	ZNF genes & repeats	Fetal Intestine Large	intestine
23	chr19:36882600-36890400	ZNF genes & repeats	Ganglion Eminence derived primary cultured neurospheres	brain
24	chr19:36882600-36893600	ZNF genes & repeats	Breast Myoepithelial Primary Cells	Breast
25	chr19:36882600-36904200	ZNF genes & repeats	Primary hematopoietic stem cells G-CSF-mobilized Female	--
26	chr19:36882800-36888800	ZNF genes & repeats	Lung	lung
27	chr19:36882800-36893000	Strong transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
28	chr19:36883000-36888800	ZNF genes & repeats	Thymus	Thymus
29	chr19:36883000-36888800	ZNF genes & repeats	Dnd41	blood
30	chr19:36883000-36890600	ZNF genes & repeats	Primary Natural Killer cells fromperipheralblood	blood
31	chr19:36883000-36892800	ZNF genes & repeats	Ovary	ovary
32	chr19:36883000-36893000	ZNF genes & repeats	Primary T helper 17 cells PMA-I stimulated	--
33	chr19:36883000-36893400	Strong transcription	Placenta Amnion	Placenta Amnion
34	chr19:36883000-36905200	ZNF genes & repeats	Primary T regulatory cells fromperipheralblood	blood
35	chr19:36883200-36892800	Strong transcription	Foreskin Fibroblast Primary Cells skin02	Skin
36	chr19:36883600-36893800	ZNF genes & repeats	Primary T helper cells fromperipheralblood	blood
37	chr19:36884800-36890000	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
38	chr19:36885600-36908000	Weak transcription	K562	blood
39	chr19:36886000-36890600	ZNF genes & repeats	Fetal Stomach	stomach
40	chr19:36886200-36893800	Strong transcription	ES-UCSF4 Cell Line	embryonic stem cell
41	chr19:36886400-36889600	Weak transcription	NHDF-Ad	bronchial
42	chr19:36886400-36890600	ZNF genes & repeats	Fetal Intestine Small	intestine
43	chr19:36886400-36901000	Weak transcription	Stomach Mucosa	stomach
44	chr19:36886600-36888800	Weak transcription	Primary T helper naive cells from peripheral blood	blood
45	chr19:36886600-36888800	Weak transcription	Osteobl	bone
46	chr19:36886600-36889000	Weak transcription	Small Intestine	intestine
47	chr19:36886600-36889400	Weak transcription	Fetal Brain Male	brain
48	chr19:36886600-36889400	Weak transcription	Stomach Smooth Muscle	stomach
49	chr19:36886600-36889600	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
50	chr19:36886600-36889600	Weak transcription	Muscle Satellite Cultured Cells	--

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