Variant report

Variant	rs2891870
Chromosome Location	chr19:36876231-36876232
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 20 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:19)

rs_ID	r²[population]
rs16971042	1.00[ASW][hapmap];0.89[LWK][hapmap];1.00[MEX][hapmap];0.91[MKK][hapmap];0.87[YRI][hapmap];0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs16971046	1.00[ASW][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];1.00[YRI][hapmap];0.97[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs17464619	0.81[YRI][hapmap];0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs2385798	1.00[ASW][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs56854596	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs59953432	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs60043543	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7254161	1.00[ASW][hapmap];0.95[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73602361	0.83[AFR][1000 genomes]
rs73602365	0.83[AFR][1000 genomes]
rs73602375	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73606471	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73606491	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73608310	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73608312	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73608349	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73608364	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73608381	0.87[AFR][1000 genomes]
rs73614529	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv833816	chr19:36824257-37034287	ZNF genes & repeats Active TSS Weak transcription Enhancers Flanking Active TSS Strong transcription Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	29 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr19:36870600-36878200	Weak transcription	Fetal Brain Female	brain
2	chr19:36870600-36880400	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
3	chr19:36870600-36880600	Weak transcription	Ovary	ovary
4	chr19:36870800-36878000	Weak transcription	Brain Germinal Matrix	brain
5	chr19:36870800-36882400	Weak transcription	Brain Inferior Temporal Lobe	brain

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links