Variant report

Variant	rs73608310
Chromosome Location	chr19:36868198-36868199
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	STAT3	chr19:36868040-36868240	MCF10A-Er-Src	breast:	n/a	chr19:36868065-36868077

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr19:36867523..36870095-chr19:37064121..37065626,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000266973	TF binding region
ENSG00000186020	Chromatin interaction
ENSG00000233527	Chromatin interaction

Extended variants
information (count: 21 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:20)

rs_ID	r²[population]
rs16971042	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs16971046	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs17464619	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs2385798	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs2891870	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs56854596	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs57085758	0.86[AFR][1000 genomes]
rs59953432	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs60043543	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7254161	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73602361	0.91[AFR][1000 genomes]
rs73602365	0.91[AFR][1000 genomes]
rs73602375	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73606471	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73606491	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73608312	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73608349	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73608364	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73608381	0.88[AFR][1000 genomes]
rs73614529	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv833816	chr19:36824257-37034287	ZNF genes & repeats Active TSS Weak transcription Enhancers Flanking Active TSS Strong transcription Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	29 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:83 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr19:36830600-36869400	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
2	chr19:36832200-36868600	Weak transcription	Placenta Amnion	Placenta Amnion
3	chr19:36834200-36868800	Weak transcription	Muscle Satellite Cultured Cells	--
4	chr19:36835800-36868800	Weak transcription	H1 Cell Line	embryonic stem cell
5	chr19:36838000-36868600	Weak transcription	Stomach Mucosa	stomach
6	chr19:36844200-36868800	Weak transcription	H9 Cell Line	embryonic stem cell
7	chr19:36856600-36868400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
8	chr19:36858000-36868600	Weak transcription	Brain Substantia Nigra	brain
9	chr19:36858000-36869400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
10	chr19:36858400-36868200	Weak transcription	Stomach Smooth Muscle	stomach
11	chr19:36858400-36868800	Weak transcription	iPS-18 Cell Line	embryonic stem cell
12	chr19:36858400-36869400	Weak transcription	Left Ventricle	heart
13	chr19:36858600-36868600	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
14	chr19:36858600-36868600	Weak transcription	Brain Anterior Caudate	brain
15	chr19:36858600-36869200	Weak transcription	Pancreas	Pancrea
16	chr19:36858600-36869200	Weak transcription	Right Ventricle	heart
17	chr19:36858800-36868600	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
18	chr19:36859000-36868400	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
19	chr19:36859000-36868800	Weak transcription	HUES48 Cell Line	embryonic stem cell
20	chr19:36859000-36868800	Weak transcription	HUES64 Cell Line	embryonic stem cell
21	chr19:36859000-36869000	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
22	chr19:36861600-36868800	Weak transcription	Rectal Smooth Muscle	rectum
23	chr19:36861800-36868400	Weak transcription	Ovary	ovary
24	chr19:36861800-36868600	Weak transcription	Adipose Nuclei	Adipose
25	chr19:36861800-36868600	Weak transcription	Rectal Mucosa Donor 29	rectum
26	chr19:36861800-36868600	Weak transcription	Skeletal Muscle Male	skeletal muscle
27	chr19:36861800-36868600	Weak transcription	Skeletal Muscle Female	skeletal muscle
28	chr19:36861800-36868600	Weak transcription	Thymus	Thymus
29	chr19:36861800-36868800	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
30	chr19:36861800-36869000	Weak transcription	Gastric	stomach
31	chr19:36861800-36869200	Weak transcription	Aorta	Aorta
32	chr19:36862200-36869000	Weak transcription	Spleen	Spleen
33	chr19:36862800-36868600	Weak transcription	Primary B cells from peripheral blood	blood
34	chr19:36863600-36868800	ZNF genes & repeats	A549	lung
35	chr19:36863800-36868200	Weak transcription	Duodenum Smooth Muscle	Duodenum
36	chr19:36863800-36868200	Weak transcription	Fetal Muscle Trunk	muscle
37	chr19:36863800-36868600	Weak transcription	Fetal Kidney	kidney
38	chr19:36864000-36868200	Weak transcription	Fetal Muscle Leg	muscle
39	chr19:36864400-36868600	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
40	chr19:36865000-36868600	Weak transcription	Small Intestine	intestine
41	chr19:36865200-36868200	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
42	chr19:36865200-36869400	Weak transcription	Lung	lung
43	chr19:36865400-36868200	Weak transcription	Fetal Stomach	stomach
44	chr19:36865400-36868400	Weak transcription	Hela-S3	cervix
45	chr19:36866000-36868200	Weak transcription	Cortex derived primary cultured neurospheres	brain
46	chr19:36866000-36868400	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
47	chr19:36866000-36868800	Weak transcription	Primary T helper naive cells from peripheral blood	blood
48	chr19:36866200-36868400	Weak transcription	Primary T helper cells PMA-I stimulated	--
49	chr19:36866200-36868600	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
50	chr19:36866200-36868600	Weak transcription	Primary hematopoietic stem cells short term culture	blood

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