Variant report
| Variant | rs16974547 |
|---|---|
| Chromosome Location | chr15:54646194-54646195 |
| allele | C/T |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:0)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:23)
| rs_ID | r2[population] |
|---|---|
| rs1858357 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs4616246 | 1.00[AMR][1000 genomes] |
| rs57108748 | 1.00[AMR][1000 genomes] |
| rs61588631 | 1.00[AMR][1000 genomes] |
| rs7164366 | 1.00[AMR][1000 genomes] |
| rs7170627 | 1.00[AMR][1000 genomes] |
| rs7180443 | 1.00[AMR][1000 genomes] |
| rs7183523 | 1.00[AMR][1000 genomes] |
| rs74013511 | 1.00[AMR][1000 genomes] |
| rs74013512 | 1.00[AMR][1000 genomes] |
| rs74013520 | 1.00[AMR][1000 genomes] |
| rs74013601 | 1.00[AMR][1000 genomes] |
| rs74015106 | 1.00[AMR][1000 genomes] |
| rs74015109 | 1.00[AMR][1000 genomes] |
| rs74015110 | 1.00[AMR][1000 genomes] |
| rs74015113 | 1.00[AMR][1000 genomes] |
| rs74015115 | 1.00[AMR][1000 genomes] |
| rs74015124 | 1.00[AMR][1000 genomes] |
| rs74015136 | 1.00[AMR][1000 genomes] |
| rs74015138 | 1.00[AMR][1000 genomes] |
| rs74015143 | 1.00[AMR][1000 genomes] |
| rs74015152 | 1.00[AMR][1000 genomes] |
| rs74015156 | 1.00[AMR][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv817539 | chr15:54132584-55095235 | Weak transcription Flanking Active TSS Enhancers Bivalent/Poised TSS Active TSS Flanking Bivalent TSS/Enh Genic enhancers ZNF genes & repeats Bivalent Enhancer Strong transcription | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA target site | 8 gene(s) | inside rSNPs | diseases |
| 2 | esv1845471 | chr15:54556063-54685463 | Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS | TF binding regionCpG islandChromatin interactive regionlncRNA | 2 gene(s) | inside rSNPs | diseases |
| No data |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr15:54547000-54652600 | Weak transcription | Fetal Lung | lung |
