Variant report

rSNPs within LD-proxies of this variant (count:25)

rs_ID	r²[population]
rs16974547	1.00[AMR][1000 genomes]
rs1858357	1.00[AMR][1000 genomes]
rs4616246	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs57108748	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs61588631	1.00[AMR][1000 genomes]
rs7164366	1.00[YRI][hapmap];0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7167027	1.00[AMR][1000 genomes]
rs7180443	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7183523	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs74013511	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs74013512	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs74013520	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs74013601	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs74015106	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs74015108	0.89[AFR][1000 genomes]
rs74015109	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs74015110	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs74015113	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs74015115	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs74015124	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs74015136	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs74015138	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs74015143	1.00[AMR][1000 genomes]
rs74015152	1.00[AMR][1000 genomes]
rs74015156	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1052235	chr15:53677524-54618723	Enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent/Poised TSS Active TSS Weak transcription Strong transcription ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases
2	nsv542388	chr15:53677524-54618723	Enhancers Active TSS Weak transcription Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer Strong transcription ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases
3	nsv817539	chr15:54132584-55095235	Weak transcription Flanking Active TSS Enhancers Bivalent/Poised TSS Active TSS Flanking Bivalent TSS/Enh Genic enhancers ZNF genes & repeats Bivalent Enhancer Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	8 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:54519000-54554400	Weak transcription	Aorta	Aorta
2	chr15:54519400-54549600	Weak transcription	Skeletal Muscle Female	skeletal muscle
3	chr15:54542600-54549800	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
4	chr15:54547000-54652600	Weak transcription	Fetal Lung	lung

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