Variant report

Variant	rs1858357
Chromosome Location	chr15:54665533-54665534
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 26 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:24)

rs_ID	r²[population]
rs16974547	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs4616246	1.00[AMR][1000 genomes]
rs57108748	1.00[AMR][1000 genomes]
rs61588631	1.00[AMR][1000 genomes]
rs7164366	1.00[AMR][1000 genomes]
rs7170627	1.00[AMR][1000 genomes]
rs7180443	1.00[AMR][1000 genomes]
rs7183523	1.00[AMR][1000 genomes]
rs74013511	1.00[AMR][1000 genomes]
rs74013512	1.00[AMR][1000 genomes]
rs74013520	1.00[AMR][1000 genomes]
rs74013601	1.00[AMR][1000 genomes]
rs74015106	1.00[AMR][1000 genomes]
rs74015109	1.00[AMR][1000 genomes]
rs74015110	1.00[AMR][1000 genomes]
rs74015113	1.00[AMR][1000 genomes]
rs74015115	1.00[AMR][1000 genomes]
rs74015124	1.00[AMR][1000 genomes]
rs74015136	1.00[AMR][1000 genomes]
rs74015138	1.00[AMR][1000 genomes]
rs74015143	1.00[AMR][1000 genomes]
rs74015152	1.00[AMR][1000 genomes]
rs74015156	1.00[AMR][1000 genomes]
rs8027481	1.00[YRI][hapmap]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv817539	chr15:54132584-55095235	Weak transcription Flanking Active TSS Enhancers Bivalent/Poised TSS Active TSS Flanking Bivalent TSS/Enh Genic enhancers ZNF genes & repeats Bivalent Enhancer Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	8 gene(s)	inside rSNPs	diseases
2	esv1845471	chr15:54556063-54685463	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:54654600-54665600	Weak transcription	Fetal Lung	lung
2	chr15:54665200-54665800	Enhancers	Adipose Nuclei	Adipose
3	chr15:54665400-54665600	Enhancers	Fetal Adrenal Gland	Adrenal Gland

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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