Variant report
| Variant | rs7164366 |
|---|---|
| Chromosome Location | chr15:54556718-54556719 |
| allele | A/G |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:0)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:25)
| rs_ID | r2[population] |
|---|---|
| rs16974547 | 1.00[AMR][1000 genomes] |
| rs1858357 | 1.00[AMR][1000 genomes] |
| rs4616246 | 0.94[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs57108748 | 0.86[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs61588631 | 0.80[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs7167027 | 1.00[AMR][1000 genomes] |
| rs7170627 | 1.00[YRI][hapmap];0.94[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs7180443 | 0.85[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs7183523 | 0.88[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs74013511 | 0.85[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs74013512 | 0.85[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs74013520 | 0.85[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs74013601 | 0.94[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs74015106 | 0.94[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs74015108 | 0.94[AFR][1000 genomes] |
| rs74015109 | 0.94[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs74015110 | 0.94[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs74015113 | 0.94[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs74015115 | 0.94[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs74015124 | 0.94[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs74015136 | 0.91[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs74015138 | 0.89[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs74015143 | 1.00[AMR][1000 genomes] |
| rs74015152 | 0.83[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs74015156 | 0.83[AFR][1000 genomes];1.00[AMR][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv1052235 | chr15:53677524-54618723 | Enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent/Poised TSS Active TSS Weak transcription Strong transcription ZNF genes & repeats Genic enhancers | TF binding regionCpG islandChromatin interactive regionlncRNA | 14 gene(s) | inside rSNPs | diseases |
| 2 | nsv542388 | chr15:53677524-54618723 | Enhancers Active TSS Weak transcription Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer Strong transcription ZNF genes & repeats Genic enhancers | TF binding regionCpG islandChromatin interactive regionlncRNA | 14 gene(s) | inside rSNPs | diseases |
| 3 | nsv817539 | chr15:54132584-55095235 | Weak transcription Flanking Active TSS Enhancers Bivalent/Poised TSS Active TSS Flanking Bivalent TSS/Enh Genic enhancers ZNF genes & repeats Bivalent Enhancer Strong transcription | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA target site | 8 gene(s) | inside rSNPs | diseases |
| 4 | esv1845471 | chr15:54556063-54685463 | Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS | TF binding regionCpG islandChromatin interactive regionlncRNA | 2 gene(s) | inside rSNPs | diseases |
| No data |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr15:54547000-54652600 | Weak transcription | Fetal Lung | lung |
