Variant report

Variant	rs74015152
Chromosome Location	chr15:54598346-54598347
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 29 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:25)

rs_ID	r²[population]
rs16974547	1.00[AMR][1000 genomes]
rs1858357	1.00[AMR][1000 genomes]
rs4616246	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs57108748	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs61588631	1.00[AMR][1000 genomes]
rs7164366	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7167027	1.00[AMR][1000 genomes]
rs7170627	1.00[AMR][1000 genomes]
rs7180443	1.00[AMR][1000 genomes]
rs7183523	1.00[AMR][1000 genomes]
rs74013511	1.00[AMR][1000 genomes]
rs74013512	1.00[AMR][1000 genomes]
rs74013520	1.00[AMR][1000 genomes]
rs74013601	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs74015106	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs74015108	0.88[AFR][1000 genomes]
rs74015109	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs74015110	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs74015113	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs74015115	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs74015124	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs74015136	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs74015138	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs74015143	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs74015156	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1052235	chr15:53677524-54618723	Enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent/Poised TSS Active TSS Weak transcription Strong transcription ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases
2	nsv542388	chr15:53677524-54618723	Enhancers Active TSS Weak transcription Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer Strong transcription ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases
3	nsv817539	chr15:54132584-55095235	Weak transcription Flanking Active TSS Enhancers Bivalent/Poised TSS Active TSS Flanking Bivalent TSS/Enh Genic enhancers ZNF genes & repeats Bivalent Enhancer Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	8 gene(s)	inside rSNPs	diseases
4	esv1845471	chr15:54556063-54685463	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:54547000-54652600	Weak transcription	Fetal Lung	lung
2	chr15:54596600-54598400	Enhancers	iPS-15b Cell Line	embryonic stem cell

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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