Variant report

Variant	rs17003455
Chromosome Location	chr4:79739249-79739250
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr4:79738518..79741060-chr4:79744387..79746561,2	MCF-7	breast:
2	chr4:79719962..79721538-chr4:79737317..79739683,2	K562	blood:

Extended variants
information (count: 17 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:14)

rs_ID	r²[population]
rs17003473	0.92[ASW][hapmap];0.97[LWK][hapmap];0.88[MKK][hapmap];1.00[YRI][hapmap];0.98[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6534058	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6834637	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6845746	1.00[YRI][hapmap];0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6851210	1.00[YRI][hapmap];0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7657861	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7659561	0.92[ASW][hapmap];0.90[LWK][hapmap];0.88[MKK][hapmap];1.00[YRI][hapmap];0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7659927	1.00[YRI][hapmap];0.98[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7672320	0.96[YRI][hapmap];0.82[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7673161	1.00[YRI][hapmap];0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7675414	0.92[ASW][hapmap];1.00[LWK][hapmap];0.88[MKK][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7682647	0.83[ASW][hapmap];0.97[LWK][hapmap];0.88[MKK][hapmap];1.00[YRI][hapmap];0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7684067	1.00[YRI][hapmap];0.98[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7697687	1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv1792021	chr4:79661618-79784245	Weak transcription Strong transcription Enhancers ZNF genes & repeats Active TSS Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	13 gene(s)	inside rSNPs	diseases
2	nsv1011365	chr4:79714695-79779723	Weak transcription Strong transcription Enhancers Genic enhancers ZNF genes & repeats Flanking Active TSS Active TSS	TF binding region CpG island Chromatin interactive region miRNA	4 gene(s)	inside rSNPs	diseases
3	nsv1007685	chr4:79732468-79788768	Weak transcription Strong transcription Flanking Active TSS Enhancers Genic enhancers Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:55 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:79714400-79748400	Weak transcription	Aorta	Aorta
2	chr4:79720800-79747800	Weak transcription	Osteobl	bone
3	chr4:79721200-79741400	Weak transcription	Thymus	Thymus
4	chr4:79721600-79747200	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
5	chr4:79726600-79747800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
6	chr4:79727800-79748200	Weak transcription	NHEK	skin
7	chr4:79728400-79747200	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
8	chr4:79728600-79747200	Weak transcription	Primary monocytes fromperipheralblood	blood
9	chr4:79729000-79747200	Weak transcription	Fetal Muscle Trunk	muscle
10	chr4:79730400-79741400	Weak transcription	Primary T cells from cord blood	blood
11	chr4:79731400-79748600	Weak transcription	Pancreas	Pancrea
12	chr4:79731600-79747400	Weak transcription	Sigmoid Colon	Sigmoid Colon
13	chr4:79731600-79748000	Weak transcription	Fetal Muscle Leg	muscle
14	chr4:79731800-79747200	Weak transcription	Left Ventricle	heart
15	chr4:79731800-79747400	Weak transcription	Liver	Liver
16	chr4:79732200-79747000	Weak transcription	NHLF	lung
17	chr4:79732400-79739600	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
18	chr4:79732400-79747200	Weak transcription	Rectal Mucosa Donor 29	rectum
19	chr4:79732400-79747800	Weak transcription	ES-I3 Cell Line	embryonic stem cell
20	chr4:79732400-79759200	Weak transcription	Rectal Smooth Muscle	rectum
21	chr4:79733000-79745000	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
22	chr4:79733400-79747400	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
23	chr4:79734200-79739800	Weak transcription	Fetal Intestine Small	intestine
24	chr4:79735400-79746800	Weak transcription	NHDF-Ad	bronchial
25	chr4:79735600-79740800	Strong transcription	Primary B cells from cord blood	blood
26	chr4:79735600-79741800	Weak transcription	Fetal Thymus	thymus
27	chr4:79735800-79739800	Weak transcription	Primary hematopoietic stem cells short term culture	blood
28	chr4:79735800-79746400	Weak transcription	Primary B cells from peripheral blood	blood
29	chr4:79735800-79746600	Weak transcription	Monocytes-CD14+_RO01746	blood
30	chr4:79735800-79747200	Weak transcription	Primary neutrophils fromperipheralblood	blood
31	chr4:79736400-79746800	Weak transcription	Primary hematopoietic stem cells	blood
32	chr4:79736400-79746800	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
33	chr4:79736400-79748600	Weak transcription	HSMM	muscle
34	chr4:79736600-79748600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
35	chr4:79737400-79747400	Weak transcription	Lung	lung
36	chr4:79738000-79746600	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
37	chr4:79738200-79748000	Weak transcription	Cortex derived primary cultured neurospheres	brain
38	chr4:79738400-79748200	Weak transcription	HepG2	liver
39	chr4:79738800-79740400	Weak transcription	K562	blood
40	chr4:79738800-79747200	Weak transcription	HUES64 Cell Line	embryonic stem cell
41	chr4:79738800-79747200	Weak transcription	Fetal Intestine Large	intestine
42	chr4:79738800-79748000	Weak transcription	iPS-18 Cell Line	embryonic stem cell
43	chr4:79738800-79748200	Weak transcription	Brain Angular Gyrus	brain
44	chr4:79738800-79793200	Weak transcription	H9 Cell Line	embryonic stem cell
45	chr4:79739000-79741200	Weak transcription	iPS-15b Cell Line	embryonic stem cell
46	chr4:79739000-79746400	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
47	chr4:79739000-79746600	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
48	chr4:79739000-79747000	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
49	chr4:79739000-79747200	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
50	chr4:79739000-79747600	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived

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