Variant report

Variant	rs6851210
Chromosome Location	chr4:79840153-79840154
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr4:79510631..79512821-chr4:79838230..79840784,2	K562	blood:
2	chr4:79838465..79840244-chr4:79841781..79843720,2	K562	blood:
3	chr4:79836564..79840244-chr4:79843893..79846943,5	K562	blood:
4	chr4:79826385..79829125-chr4:79839055..79841054,2	K562	blood:

Extended variants
information (count: 17 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:14)

rs_ID	r²[population]
rs17003455	1.00[YRI][hapmap];0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs17003473	1.00[YRI][hapmap];0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6534058	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6834637	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6845746	1.00[YRI][hapmap];0.97[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7657861	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7659561	1.00[YRI][hapmap];0.92[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7659927	1.00[YRI][hapmap];0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7672320	0.96[YRI][hapmap];0.86[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7673161	1.00[YRI][hapmap];0.97[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7675414	1.00[YRI][hapmap];0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7682647	1.00[YRI][hapmap];0.97[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7684067	1.00[YRI][hapmap];0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7697687	1.00[YRI][hapmap];0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv879504	chr4:79759796-79874275	Strong transcription Weak transcription Flanking Active TSS Active TSS Enhancers ZNF genes & repeats Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	7 gene(s)	inside rSNPs	diseases
2	nsv829979	chr4:79819168-80019159	Active TSS Weak transcription ZNF genes & repeats Enhancers Strong transcription Flanking Active TSS Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	6 gene(s)	inside rSNPs	diseases
3	nsv1000907	chr4:79838948-80224764	Weak transcription Enhancers Flanking Active TSS Strong transcription Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	8 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:115 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:79779800-79858200	Weak transcription	Fetal Brain Male	brain
2	chr4:79794200-79850000	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
3	chr4:79794200-79859600	Weak transcription	Colonic Mucosa	Colon
4	chr4:79794400-79850000	Weak transcription	Pancreas	Pancrea
5	chr4:79794800-79850200	Weak transcription	Brain Cingulate Gyrus	brain
6	chr4:79794800-79858000	Weak transcription	HepG2	liver
7	chr4:79796400-79844800	Weak transcription	Fetal Heart	heart
8	chr4:79799200-79858000	Weak transcription	Rectal Smooth Muscle	rectum
9	chr4:79812000-79842800	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
10	chr4:79814600-79859600	Weak transcription	Fetal Kidney	kidney
11	chr4:79815200-79845400	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
12	chr4:79815800-79846600	Weak transcription	Colon Smooth Muscle	Colon
13	chr4:79816000-79848200	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
14	chr4:79816200-79848600	Weak transcription	Fetal Lung	lung
15	chr4:79816200-79858400	Weak transcription	Stomach Smooth Muscle	stomach
16	chr4:79816400-79843200	Weak transcription	Muscle Satellite Cultured Cells	--
17	chr4:79827400-79858000	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
18	chr4:79827400-79858000	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
19	chr4:79829000-79859200	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
20	chr4:79830200-79850000	Weak transcription	H9 Cell Line	embryonic stem cell
21	chr4:79830200-79859200	Weak transcription	Hela-S3	cervix
22	chr4:79831000-79850000	Weak transcription	Gastric	stomach
23	chr4:79831200-79858000	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
24	chr4:79831400-79856600	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
25	chr4:79833000-79843400	Weak transcription	Brain Germinal Matrix	brain
26	chr4:79833000-79849800	Weak transcription	Fetal Stomach	stomach
27	chr4:79833000-79850000	Weak transcription	Lung	lung
28	chr4:79833000-79850000	Weak transcription	Skeletal Muscle Male	skeletal muscle
29	chr4:79833000-79850000	Weak transcription	Spleen	Spleen
30	chr4:79833000-79850000	Weak transcription	HSMMtube	muscle
31	chr4:79833000-79859800	Weak transcription	Esophagus	oesophagus
32	chr4:79833000-79859800	Weak transcription	Right Ventricle	heart
33	chr4:79833200-79842800	Weak transcription	NHEK	skin
34	chr4:79833200-79843200	Weak transcription	Fetal Muscle Leg	muscle
35	chr4:79833200-79843200	Weak transcription	Osteobl	bone
36	chr4:79833200-79844200	Weak transcription	Fetal Intestine Small	intestine
37	chr4:79833200-79844800	Weak transcription	Rectal Mucosa Donor 31	rectum
38	chr4:79833200-79845000	Weak transcription	Fetal Brain Female	brain
39	chr4:79833200-79845200	Weak transcription	Left Ventricle	heart
40	chr4:79833200-79845200	Weak transcription	Thymus	Thymus
41	chr4:79833200-79846600	Weak transcription	H1 Cell Line	embryonic stem cell
42	chr4:79833200-79847000	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
43	chr4:79833200-79847000	Weak transcription	HMEC	breast
44	chr4:79833200-79847400	Weak transcription	Brain Anterior Caudate	brain
45	chr4:79833200-79848600	Weak transcription	Aorta	Aorta
46	chr4:79833200-79848600	Weak transcription	Brain Hippocampus Middle	brain
47	chr4:79833200-79849800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
48	chr4:79833200-79849800	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
49	chr4:79833200-79849800	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
50	chr4:79833200-79849800	Weak transcription	Ovary	ovary

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