Variant report

Variant	rs7657861
Chromosome Location	chr4:79706330-79706331
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr4:79699190..79702080-chr4:79704302..79706989,3	MCF-7	breast:
2	chr4:79546177..79548904-chr4:79704201..79706828,2	K562	blood:
3	chr4:79703185..79706477-chr4:79708541..79712567,5	MCF-7	breast:

Extended variants
information (count: 15 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:14)

rs_ID	r²[population]
rs17003455	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs17003473	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6534058	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6834637	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6845746	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6851210	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7659561	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7659927	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7672320	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7673161	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7675414	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7682647	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7684067	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7697687	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv1792021	chr4:79661618-79784245	Weak transcription Strong transcription Enhancers ZNF genes & repeats Active TSS Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	13 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:86 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:79698600-79708600	Weak transcription	Pancreas	Pancrea
2	chr4:79699000-79717200	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
3	chr4:79699200-79709000	Weak transcription	Fetal Muscle Trunk	muscle
4	chr4:79699200-79709200	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
5	chr4:79699400-79722600	Weak transcription	Fetal Thymus	thymus
6	chr4:79700000-79708600	Weak transcription	A549	lung
7	chr4:79700200-79714200	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
8	chr4:79700200-79732800	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
9	chr4:79700400-79707800	Weak transcription	Brain Germinal Matrix	brain
10	chr4:79700400-79718200	Weak transcription	Duodenum Mucosa	Duodenum
11	chr4:79700600-79706600	Enhancers	Primary hematopoietic stem cells	blood
12	chr4:79701200-79708400	Weak transcription	Primary T helper cells fromperipheralblood	blood
13	chr4:79701200-79711600	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
14	chr4:79701600-79706600	Enhancers	Fetal Intestine Large	intestine
15	chr4:79701600-79706800	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
16	chr4:79701600-79719200	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
17	chr4:79701800-79709600	Enhancers	Fetal Heart	heart
18	chr4:79702000-79708600	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
19	chr4:79702000-79731200	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
20	chr4:79703000-79720800	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
21	chr4:79703200-79706400	Weak transcription	Right Ventricle	heart
22	chr4:79703200-79708600	Weak transcription	Gastric	stomach
23	chr4:79703200-79720800	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
24	chr4:79703400-79706800	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
25	chr4:79703400-79707200	Weak transcription	Left Ventricle	heart
26	chr4:79703400-79710600	Weak transcription	Spleen	Spleen
27	chr4:79703400-79720800	Weak transcription	Sigmoid Colon	Sigmoid Colon
28	chr4:79703600-79708000	Weak transcription	Stomach Mucosa	stomach
29	chr4:79703800-79706800	Weak transcription	Dnd41	blood
30	chr4:79703800-79708200	Weak transcription	HepG2	liver
31	chr4:79704200-79712600	Weak transcription	Monocytes-CD14+_RO01746	blood
32	chr4:79704200-79713200	Weak transcription	Primary monocytes fromperipheralblood	blood
33	chr4:79705000-79706800	Enhancers	Primary B cells from peripheral blood	blood
34	chr4:79705000-79706800	Enhancers	NH-A	brain
35	chr4:79705200-79706400	Enhancers	Skeletal Muscle Male	skeletal muscle
36	chr4:79705200-79707000	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
37	chr4:79705400-79707600	Enhancers	Psoas Muscle	Psoas
38	chr4:79705600-79706600	Weak transcription	Colon Smooth Muscle	Colon
39	chr4:79705600-79707600	Enhancers	Adipose Nuclei	Adipose
40	chr4:79705600-79708600	Weak transcription	Fetal Intestine Small	intestine
41	chr4:79705600-79731200	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
42	chr4:79705800-79706600	Enhancers	Brain Substantia Nigra	brain
43	chr4:79705800-79706800	Weak transcription	Primary B cells from cord blood	blood
44	chr4:79705800-79706800	Weak transcription	Brain Hippocampus Middle	brain
45	chr4:79705800-79707000	Weak transcription	Breast Myoepithelial Primary Cells	Breast
46	chr4:79705800-79707000	Weak transcription	GM12878-XiMat	blood
47	chr4:79705800-79708600	Weak transcription	Brain Cingulate Gyrus	brain
48	chr4:79705800-79708600	Weak transcription	Thymus	Thymus
49	chr4:79705800-79708800	Weak transcription	HUES64 Cell Line	embryonic stem cell
50	chr4:79705800-79710200	Weak transcription	HUES6 Cell Line	embryonic stem cell

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