Variant report

Variant	rs7672320
Chromosome Location	chr4:79864426-79864427
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 17 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:14)

rs_ID	r²[population]
rs17003455	0.96[YRI][hapmap];0.82[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs17003473	0.95[YRI][hapmap];0.84[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6534058	1.00[AMR][1000 genomes]
rs6834637	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6845746	1.00[YRI][hapmap];0.86[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6851210	0.96[YRI][hapmap];0.86[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7657861	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7659561	0.96[YRI][hapmap];0.82[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7659927	0.96[YRI][hapmap];0.84[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7673161	0.96[YRI][hapmap];0.86[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7675414	0.96[YRI][hapmap];0.82[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7682647	0.96[YRI][hapmap];0.86[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7684067	0.96[YRI][hapmap];0.84[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7697687	0.96[YRI][hapmap];0.82[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv879504	chr4:79759796-79874275	Strong transcription Weak transcription Flanking Active TSS Active TSS Enhancers ZNF genes & repeats Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	7 gene(s)	inside rSNPs	diseases
2	nsv829979	chr4:79819168-80019159	Active TSS Weak transcription ZNF genes & repeats Enhancers Strong transcription Flanking Active TSS Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	6 gene(s)	inside rSNPs	diseases
3	nsv1000907	chr4:79838948-80224764	Weak transcription Enhancers Flanking Active TSS Strong transcription Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	8 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:6 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:79863000-79865200	Weak transcription	K562	blood
2	chr4:79863200-79865400	Enhancers	Primary monocytes fromperipheralblood	blood
3	chr4:79863200-79865600	Enhancers	Monocytes-CD14+_RO01746	blood
4	chr4:79863600-79865200	Weak transcription	Fetal Intestine Small	intestine
5	chr4:79864200-79864600	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
6	chr4:79864200-79865200	Weak transcription	Primary neutrophils fromperipheralblood	blood

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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