Variant report

Variant	rs7682647
Chromosome Location	chr4:79832815-79832816
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr4:79829059..79831029-chr4:79832192..79834992,2	MCF-7	breast:
2	chr4:79829830..79832841-chr4:79834364..79837824,5	K562	blood:

Extended variants
information (count: 16 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:14)

rs_ID	r²[population]
rs17003455	0.83[ASW][hapmap];0.97[LWK][hapmap];0.88[MKK][hapmap];1.00[YRI][hapmap];0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs17003473	0.92[ASW][hapmap];1.00[LWK][hapmap];1.00[MKK][hapmap];1.00[YRI][hapmap];0.97[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6534058	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6834637	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6845746	1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6851210	1.00[YRI][hapmap];0.97[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7657861	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7659561	0.92[ASW][hapmap];0.93[LWK][hapmap];1.00[MKK][hapmap];1.00[YRI][hapmap];0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7659927	1.00[YRI][hapmap];0.97[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7672320	0.96[YRI][hapmap];0.86[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7673161	1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7675414	0.92[ASW][hapmap];0.97[LWK][hapmap];1.00[MKK][hapmap];1.00[YRI][hapmap];0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7684067	1.00[YRI][hapmap];0.97[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7697687	1.00[YRI][hapmap];0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv879504	chr4:79759796-79874275	Strong transcription Weak transcription Flanking Active TSS Active TSS Enhancers ZNF genes & repeats Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	7 gene(s)	inside rSNPs	diseases
2	nsv829979	chr4:79819168-80019159	Active TSS Weak transcription ZNF genes & repeats Enhancers Strong transcription Flanking Active TSS Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:116 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:79779800-79858200	Weak transcription	Fetal Brain Male	brain
2	chr4:79794200-79850000	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
3	chr4:79794200-79859600	Weak transcription	Colonic Mucosa	Colon
4	chr4:79794400-79850000	Weak transcription	Pancreas	Pancrea
5	chr4:79794800-79850200	Weak transcription	Brain Cingulate Gyrus	brain
6	chr4:79794800-79858000	Weak transcription	HepG2	liver
7	chr4:79795000-79838200	Weak transcription	Brain Inferior Temporal Lobe	brain
8	chr4:79796400-79844800	Weak transcription	Fetal Heart	heart
9	chr4:79798000-79838400	Weak transcription	ES-I3 Cell Line	embryonic stem cell
10	chr4:79798400-79835400	Weak transcription	Brain Angular Gyrus	brain
11	chr4:79799200-79858000	Weak transcription	Rectal Smooth Muscle	rectum
12	chr4:79809800-79838400	Weak transcription	iPS-18 Cell Line	embryonic stem cell
13	chr4:79810000-79838200	Weak transcription	HUES48 Cell Line	embryonic stem cell
14	chr4:79812000-79842800	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
15	chr4:79814600-79859600	Weak transcription	Fetal Kidney	kidney
16	chr4:79814800-79837800	Weak transcription	iPS-20b Cell Line	embryonic stem cell
17	chr4:79815200-79845400	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
18	chr4:79815800-79838200	Weak transcription	Psoas Muscle	Psoas
19	chr4:79815800-79838400	Weak transcription	Primary T helper cells fromperipheralblood	blood
20	chr4:79815800-79846600	Weak transcription	Colon Smooth Muscle	Colon
21	chr4:79816000-79848200	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
22	chr4:79816200-79848600	Weak transcription	Fetal Lung	lung
23	chr4:79816200-79858400	Weak transcription	Stomach Smooth Muscle	stomach
24	chr4:79816400-79843200	Weak transcription	Muscle Satellite Cultured Cells	--
25	chr4:79825000-79835600	Weak transcription	Breast Myoepithelial Primary Cells	Breast
26	chr4:79827200-79834000	Strong transcription	Monocytes-CD14+_RO01746	blood
27	chr4:79827400-79858000	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
28	chr4:79827400-79858000	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
29	chr4:79827600-79833600	Strong transcription	K562	blood
30	chr4:79828400-79833600	Strong transcription	Primary B cells from cord blood	blood
31	chr4:79828800-79833200	Strong transcription	NHLF	lung
32	chr4:79828800-79837800	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
33	chr4:79829000-79859200	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
34	chr4:79829200-79833400	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
35	chr4:79829400-79839000	Strong transcription	Dnd41	blood
36	chr4:79830200-79850000	Weak transcription	H9 Cell Line	embryonic stem cell
37	chr4:79830200-79859200	Weak transcription	Hela-S3	cervix
38	chr4:79830600-79833200	Strong transcription	Fetal Thymus	thymus
39	chr4:79830600-79833400	Strong transcription	Primary B cells from peripheral blood	blood
40	chr4:79830600-79833600	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
41	chr4:79830600-79834000	Strong transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
42	chr4:79830600-79839000	Strong transcription	Primary monocytes fromperipheralblood	blood
43	chr4:79830800-79833600	Strong transcription	HUVEC	blood vessel
44	chr4:79831000-79838600	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
45	chr4:79831000-79850000	Weak transcription	Gastric	stomach
46	chr4:79831200-79858000	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
47	chr4:79831400-79833000	Strong transcription	Fetal Adrenal Gland	Adrenal Gland
48	chr4:79831400-79833200	Strong transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
49	chr4:79831400-79833400	Strong transcription	Liver	Liver
50	chr4:79831400-79833400	Strong transcription	Duodenum Smooth Muscle	Duodenum

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