Variant report

Variant	rs17003730
Chromosome Location	chr21:15963598-15963599
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 17 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:12)

rs_ID	r²[population]
rs17003731	0.91[AFR][1000 genomes]
rs17003771	1.00[AMR][1000 genomes]
rs17003818	1.00[AMR][1000 genomes]
rs17003833	1.00[AMR][1000 genomes]
rs55940266	1.00[AMR][1000 genomes]
rs55997140	1.00[AMR][1000 genomes]
rs58508672	1.00[AMR][1000 genomes]
rs73891894	1.00[AMR][1000 genomes]
rs73894110	1.00[AMR][1000 genomes]
rs73894246	1.00[AMR][1000 genomes]
rs8132385	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs8134452	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1059591	chr21:15835325-15969195	Weak transcription Enhancers Flanking Active TSS Genic enhancers ZNF genes & repeats Active TSS Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
2	nsv1057934	chr21:15863224-15969195	Strong transcription Weak transcription Flanking Active TSS Enhancers Active TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
3	nsv834045	chr21:15900678-16112850	Enhancers Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats Genic enhancers Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
4	nsv834046	chr21:15903792-16077369	Weak transcription Enhancers Flanking Active TSS Active TSS Strong transcription ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
5	nsv470879	chr21:15946828-15964278	Enhancers Active TSS Flanking Active TSS Weak transcription ZNF genes & repeats	TF binding region Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:19 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr21:15961400-15965200	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
2	chr21:15961800-15964400	ZNF genes & repeats	GM12878-XiMat	blood
3	chr21:15962000-15965200	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
4	chr21:15962400-15965000	Enhancers	Primary T killer memory cells from peripheral blood	blood
5	chr21:15962400-15966200	Enhancers	Primary monocytes fromperipheralblood	blood
6	chr21:15962600-15963600	Enhancers	Monocytes-CD14+_RO01746	blood
7	chr21:15962600-15963800	Weak transcription	Primary T helper naive cells from peripheral blood	blood
8	chr21:15962600-15964600	Enhancers	Primary neutrophils fromperipheralblood	blood
9	chr21:15962600-15965000	Enhancers	Primary T helper cells fromperipheralblood	blood
10	chr21:15962600-15965200	Enhancers	Primary T helper cells PMA-I stimulated	--
11	chr21:15962800-15963800	Weak transcription	K562	blood
12	chr21:15962800-15965200	Enhancers	Primary T regulatory cells fromperipheralblood	blood
13	chr21:15963000-15964200	Weak transcription	Primary B cells from peripheral blood	blood
14	chr21:15963000-15964200	Weak transcription	Primary T cells fromperipheralblood	blood
15	chr21:15963000-15964200	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
16	chr21:15963000-15965000	Enhancers	Primary T helper 17 cells PMA-I stimulated	--
17	chr21:15963200-15964000	Weak transcription	Primary T cells from cord blood	blood
18	chr21:15963200-15965400	Weak transcription	Primary B cells from cord blood	blood
19	chr21:15963400-15963800	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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