Variant report

Variant	rs17003771
Chromosome Location	chr21:15979765-15979766
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 13 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:11)

rs_ID	r²[population]
rs17003730	1.00[AMR][1000 genomes]
rs17003818	1.00[AMR][1000 genomes]
rs17003833	1.00[AMR][1000 genomes]
rs55940266	1.00[AMR][1000 genomes]
rs55997140	1.00[AMR][1000 genomes]
rs58508672	1.00[AMR][1000 genomes]
rs73891894	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73894110	1.00[AMR][1000 genomes]
rs73894246	1.00[AMR][1000 genomes]
rs8132385	1.00[AMR][1000 genomes]
rs8134452	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv834045	chr21:15900678-16112850	Enhancers Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats Genic enhancers Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
2	nsv834046	chr21:15903792-16077369	Weak transcription Enhancers Flanking Active TSS Active TSS Strong transcription ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:14 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr21:15975600-15984400	Weak transcription	Primary T helper naive cells from peripheral blood	blood
2	chr21:15976000-15979800	Weak transcription	K562	blood
3	chr21:15976000-15980800	Weak transcription	Dnd41	blood
4	chr21:15976000-15981000	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
5	chr21:15978000-15980400	Weak transcription	HUES6 Cell Line	embryonic stem cell
6	chr21:15979200-15981000	Enhancers	iPS-18 Cell Line	embryonic stem cell
7	chr21:15979400-15980000	Enhancers	ES-I3 Cell Line	embryonic stem cell
8	chr21:15979400-15980000	Enhancers	HUES64 Cell Line	embryonic stem cell
9	chr21:15979400-15980000	Enhancers	iPS-15b Cell Line	embryonic stem cell
10	chr21:15979400-15980000	Enhancers	iPS-20b Cell Line	embryonic stem cell
11	chr21:15979400-15980000	Enhancers	Primary hematopoietic stem cells short term culture	blood
12	chr21:15979400-15980200	Enhancers	H9 Cell Line	embryonic stem cell
13	chr21:15979600-15980000	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
14	chr21:15979600-15980400	Enhancers	H1 Cell Line	embryonic stem cell

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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