Variant report

Variant	rs58508672
Chromosome Location	chr21:15967388-15967389
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 16 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:12)

rs_ID	r²[population]
rs17003730	1.00[AMR][1000 genomes]
rs17003731	0.87[AFR][1000 genomes]
rs17003771	1.00[AMR][1000 genomes]
rs17003818	1.00[AMR][1000 genomes]
rs17003833	1.00[AMR][1000 genomes]
rs55940266	1.00[AMR][1000 genomes]
rs55997140	1.00[AMR][1000 genomes]
rs73891894	1.00[AMR][1000 genomes]
rs73894110	1.00[AMR][1000 genomes]
rs73894246	1.00[AMR][1000 genomes]
rs8132385	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs8134452	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1059591	chr21:15835325-15969195	Weak transcription Enhancers Flanking Active TSS Genic enhancers ZNF genes & repeats Active TSS Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
2	nsv1057934	chr21:15863224-15969195	Strong transcription Weak transcription Flanking Active TSS Enhancers Active TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
3	nsv834045	chr21:15900678-16112850	Enhancers Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats Genic enhancers Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
4	nsv834046	chr21:15903792-16077369	Weak transcription Enhancers Flanking Active TSS Active TSS Strong transcription ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr21:15964400-15969000	Weak transcription	H9 Cell Line	embryonic stem cell
2	chr21:15965000-15967400	Enhancers	Primary neutrophils fromperipheralblood	blood
3	chr21:15965000-15970800	Weak transcription	Fetal Lung	lung
4	chr21:15965800-15967600	Weak transcription	Primary B cells from cord blood	blood
5	chr21:15966800-15970000	Weak transcription	Fetal Stomach	stomach

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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