Variant report

Variant	rs17003818
Chromosome Location	chr21:16001676-16001677
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 19 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:16)

rs_ID	r²[population]
rs17003730	1.00[AMR][1000 genomes]
rs17003731	1.00[YRI][hapmap]
rs17003771	1.00[AMR][1000 genomes]
rs17003785	1.00[YRI][hapmap]
rs17003833	1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs17003885	1.00[YRI][hapmap]
rs17003916	0.82[YRI][hapmap]
rs17003939	1.00[YRI][hapmap]
rs55940266	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs55997140	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs58508672	1.00[AMR][1000 genomes]
rs73891894	1.00[AMR][1000 genomes]
rs73894110	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73894246	1.00[AMR][1000 genomes]
rs8132385	1.00[YRI][hapmap];0.83[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs8134452	1.00[YRI][hapmap];0.83[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv834045	chr21:15900678-16112850	Enhancers Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats Genic enhancers Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
2	nsv834046	chr21:15903792-16077369	Weak transcription Enhancers Flanking Active TSS Active TSS Strong transcription ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
3	nsv3457	chr21:15996855-16042349	Enhancers Weak transcription Flanking Active TSS Active TSS	TF binding region Chromatin interactive region	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:9 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr21:15994400-16001800	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
2	chr21:16000400-16001800	Weak transcription	K562	blood
3	chr21:16001400-16002600	Enhancers	HUES48 Cell Line	embryonic stem cell
4	chr21:16001400-16002800	Enhancers	iPS-20b Cell Line	embryonic stem cell
5	chr21:16001600-16002400	Enhancers	HUES64 Cell Line	embryonic stem cell
6	chr21:16001600-16002600	Enhancers	H1 Cell Line	embryonic stem cell
7	chr21:16001600-16002600	Enhancers	iPS-15b Cell Line	embryonic stem cell
8	chr21:16001600-16002600	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
9	chr21:16001600-16003600	Enhancers	Primary T helper memory cells from peripheral blood 2	blood

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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