Variant report

Variant	rs8134452
Chromosome Location	chr21:15984061-15984062
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 17 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:15)

rs_ID	r²[population]
rs17003730	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs17003731	1.00[YRI][hapmap];0.91[AFR][1000 genomes]
rs17003771	1.00[AMR][1000 genomes]
rs17003785	1.00[YRI][hapmap]
rs17003818	1.00[YRI][hapmap];0.83[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs17003833	1.00[YRI][hapmap];0.83[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs17003885	1.00[YRI][hapmap]
rs17003939	1.00[YRI][hapmap]
rs55940266	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs55997140	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs58508672	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73891894	1.00[AMR][1000 genomes]
rs73894110	1.00[AMR][1000 genomes]
rs73894246	1.00[AMR][1000 genomes]
rs8132385	1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv834045	chr21:15900678-16112850	Enhancers Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats Genic enhancers Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
2	nsv834046	chr21:15903792-16077369	Weak transcription Enhancers Flanking Active TSS Active TSS Strong transcription ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:10 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr21:15975600-15984400	Weak transcription	Primary T helper naive cells from peripheral blood	blood
2	chr21:15980800-15986600	Weak transcription	K562	blood
3	chr21:15981000-15984800	Weak transcription	iPS-18 Cell Line	embryonic stem cell
4	chr21:15981000-15989400	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
5	chr21:15982600-15984200	ZNF genes & repeats	HUES6 Cell Line	embryonic stem cell
6	chr21:15983400-15986800	Weak transcription	H9 Cell Line	embryonic stem cell
7	chr21:15983600-15985000	Weak transcription	iPS-15b Cell Line	embryonic stem cell
8	chr21:15983800-15989800	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
9	chr21:15984000-15984800	Weak transcription	HUES48 Cell Line	embryonic stem cell
10	chr21:15984000-15984800	Weak transcription	iPS-20b Cell Line	embryonic stem cell

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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