Variant report

Variant	rs17006722
Chromosome Location	chr3:70138308-70138309
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr3:70129711..70131295-chr3:70136783..70139113,2	K562	blood:

Extended variants
information (count: 36 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:35)

rs_ID	r²[population]
rs10084760	0.91[AMR][1000 genomes];0.89[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs12492173	0.81[ASN][1000 genomes]
rs12494970	0.93[AMR][1000 genomes];0.90[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs13318539	0.82[ASN][1000 genomes]
rs13324738	0.91[AMR][1000 genomes];0.89[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs13327166	0.91[AMR][1000 genomes];0.89[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs13327169	0.88[MEX][hapmap];0.83[AMR][1000 genomes]
rs35026817	0.84[ASN][1000 genomes]
rs4132502	0.89[CEU][hapmap];0.85[CHB][hapmap];0.91[JPT][hapmap];0.87[AMR][1000 genomes];0.88[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs4132504	0.82[CHB][hapmap];0.95[JPT][hapmap];0.80[ASN][1000 genomes]
rs4974261	0.95[CEU][hapmap];0.82[CHB][hapmap];0.86[CHD][hapmap];0.95[JPT][hapmap];1.00[MEX][hapmap];0.89[TSI][hapmap];0.91[AMR][1000 genomes];0.88[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs59260955	0.85[AMR][1000 genomes]
rs59312808	0.93[AMR][1000 genomes];0.89[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs59403967	0.83[ASN][1000 genomes]
rs6549272	0.84[ASN][1000 genomes]
rs6549275	0.91[AMR][1000 genomes];0.88[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs6549281	0.90[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs6806567	0.91[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs6807288	0.88[AMR][1000 genomes];0.86[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs73105970	0.84[ASN][1000 genomes]
rs73105989	0.87[AFR][1000 genomes];0.82[ASN][1000 genomes]
rs73108022	0.83[AFR][1000 genomes];0.93[AMR][1000 genomes];0.89[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs73108030	0.91[AMR][1000 genomes];0.88[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs73108033	0.91[AMR][1000 genomes];0.88[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs7340562	0.84[AMR][1000 genomes]
rs9310182	0.93[AMR][1000 genomes];0.89[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs9811076	0.81[ASN][1000 genomes]
rs9814727	0.84[ASN][1000 genomes]
rs9817902	0.89[CEU][hapmap];0.82[CHB][hapmap];0.84[CHD][hapmap];0.95[JPT][hapmap];0.92[TSI][hapmap];0.93[AMR][1000 genomes];0.89[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs9824741	0.84[AMR][1000 genomes]
rs9849979	0.91[AMR][1000 genomes];0.89[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs9856733	0.82[ASN][1000 genomes]
rs9857007	0.81[ASN][1000 genomes]
rs9868919	0.82[AMR][1000 genomes]
rs9881087	0.84[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv533396	chr3:69964029-70538306	Weak transcription Enhancers Genic enhancers Active TSS Strong transcription ZNF genes & repeats Flanking Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	16 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs17006722	SUCLG2	cis	parietal	SCAN

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:70125800-70141200	Weak transcription	Aorta	Aorta
2	chr3:70134600-70139800	Weak transcription	HUVEC	blood vessel

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