Variant report

Variant	rs4974261
Chromosome Location	chr3:70185410-70185411
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	MYC	chr3:70185277-70185453	MCF10A-Er-Src	breast:	n/a	n/a

Variant related genes	Relation type
UQCRHP4	TF binding region

Extended variants
information (count: 38 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:37)

rs_ID	r²[population]
rs10084760	0.97[AMR][1000 genomes];0.97[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs12492173	0.82[AMR][1000 genomes];0.91[ASN][1000 genomes]
rs12494970	0.99[AMR][1000 genomes];0.98[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs13318539	0.89[ASN][1000 genomes]
rs13324738	0.97[AMR][1000 genomes];0.97[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs13327166	0.97[AMR][1000 genomes];0.97[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs13327169	0.80[ASW][hapmap];0.88[MEX][hapmap];0.89[TSI][hapmap];0.92[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs17006722	0.91[AMR][1000 genomes];0.88[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs34951219	0.81[ASN][1000 genomes]
rs4132502	0.94[CEU][hapmap];1.00[CHB][hapmap];0.86[JPT][hapmap];0.89[AFR][1000 genomes];0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs4132504	1.00[CHB][hapmap];0.91[JPT][hapmap];0.89[YRI][hapmap];0.92[AFR][1000 genomes];0.83[AMR][1000 genomes];0.98[ASN][1000 genomes]
rs59260955	0.90[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs59312808	0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs59403967	0.82[AMR][1000 genomes];0.98[ASN][1000 genomes]
rs6549272	0.82[AMR][1000 genomes];0.97[ASN][1000 genomes]
rs6549275	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs6549281	0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs6806567	0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs6807288	0.94[AMR][1000 genomes];0.91[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs73105970	0.83[AMR][1000 genomes];0.90[ASN][1000 genomes]
rs73105989	0.83[AMR][1000 genomes];0.89[ASN][1000 genomes]
rs73108022	0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs73108030	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs73108033	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs7340562	0.92[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs9310182	0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs9811076	0.82[AMR][1000 genomes];0.91[ASN][1000 genomes]
rs9814727	0.83[AMR][1000 genomes];0.97[ASN][1000 genomes]
rs9817459	0.85[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs9817902	0.94[CEU][hapmap];1.00[CHB][hapmap];0.98[CHD][hapmap];1.00[JPT][hapmap];0.97[TSI][hapmap];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs9824741	0.92[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs9849979	0.97[AMR][1000 genomes];0.97[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs9856733	0.83[AMR][1000 genomes];0.89[ASN][1000 genomes]
rs9857007	0.84[AMR][1000 genomes];0.88[ASN][1000 genomes]
rs9868919	0.90[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs9880622	0.85[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs9881087	0.83[AMR][1000 genomes];0.97[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv533396	chr3:69964029-70538306	Weak transcription Enhancers Genic enhancers Active TSS Strong transcription ZNF genes & repeats Flanking Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	16 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs4974261	SUCLG2	cis	parietal	SCAN

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:70172800-70186800	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
2	chr3:70182600-70186000	Weak transcription	H9 Cell Line	embryonic stem cell
3	chr3:70185400-70185800	Active TSS	Gastric	stomach

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